Strain Fitness in Shewanella amazonensis SB2B around Sama_1266

Experiment: NAG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG
1,551,178	+				+0.3
1,551,201	-				+1.4
1,551,201	-				-1.0
1,551,213	+				+0.4
1,551,213	+				+0.5
1,551,213	+				+1.2
1,551,214	-				+0.9
1,551,219	+				-0.1
1,551,219	+				+0.2
1,551,219	+				+0.5
1,551,219	+				+0.4
1,551,219	+				+0.7
1,551,220	-				+1.6
1,551,220	-				+0.6
1,551,220	-				-0.8
1,551,221	+				-0.0
1,551,221	+				+0.1
1,551,221	+				+1.3
1,551,221	+				-0.4
1,551,221	+				+0.4
1,551,236	+				+0.7
1,551,236	+				+1.3
1,551,237	-				-1.2
1,551,300	+		Sama_1264	0.19	+1.1
1,551,300	+		Sama_1264	0.19	+1.4
1,551,301	-		Sama_1264	0.20	-1.3
1,551,301	-		Sama_1264	0.20	-1.0
1,551,301	-		Sama_1264	0.20	-0.0
1,551,302	+		Sama_1264	0.20	-1.7
1,551,312	+		Sama_1264	0.25	-1.2
1,551,312	+		Sama_1264	0.25	+0.3
1,551,312	+		Sama_1264	0.25	+0.2
1,551,312	+		Sama_1264	0.25	+2.0
1,551,312	+		Sama_1264	0.25	-1.2
1,551,314	+		Sama_1264	0.26	+0.4
1,551,314	+		Sama_1264	0.26	+0.3
1,551,314	+		Sama_1264	0.26	+0.3
1,551,323	+		Sama_1264	0.29	+1.0
1,551,328	+		Sama_1264	0.32	+1.1
1,551,328	+		Sama_1264	0.32	-0.2
1,551,367	+		Sama_1264	0.48	-0.5
1,551,368	-		Sama_1264	0.49	+0.3
1,551,483	+				-0.6
1,551,495	+				-2.2
1,551,495	+				-1.7
1,551,495	+				-2.7
1,551,495	+				+0.6
1,551,496	-				-0.7
1,551,496	-				-1.2
1,551,496	-				-1.6
1,551,517	+				-0.0
1,551,595	-		Sama_1265	0.24	+0.3
1,551,718	+		Sama_1265	0.55	-2.6
1,551,718	+		Sama_1265	0.55	-0.6
1,551,719	-		Sama_1265	0.55	-0.8
1,551,719	-		Sama_1265	0.55	-0.4
1,551,731	+		Sama_1265	0.58	-1.0
1,551,731	+		Sama_1265	0.58	-2.0
1,551,731	+		Sama_1265	0.58	-1.2
1,551,766	+		Sama_1265	0.67	-1.7
1,551,841	+		Sama_1265	0.86	-0.7
1,551,889	+				-0.5
1,551,889	+				-0.6
1,551,889	+				-2.0
1,551,889	+				-0.4
1,551,890	-				-0.5
1,551,912	-				+0.9
1,551,946	+				-0.3
1,551,952	-				+0.0
1,551,952	-				+1.0
1,551,969	-				+0.7
1,551,969	-				+1.1
1,551,986	-				-1.3
1,552,022	-				-0.3
1,552,022	-				-0.9
1,552,027	+				+0.7
1,552,037	+				+0.4
1,552,037	+				+1.1
1,552,080	+				-2.1
1,552,101	-				-0.9
1,552,113	+				-3.3
1,552,113	+				-2.2
1,552,113	+				-1.7
1,552,147	+				+0.6
1,552,147	+				+0.3
1,552,147	+				-0.2
1,552,147	+				+0.3
1,552,147	+				-0.7
1,552,147	+				+0.0
1,552,147	+				-2.2
1,552,148	-				-0.2
1,552,148	-				-0.1
1,552,148	-				+0.9
1,552,148	-				+0.6
1,552,148	-				+0.2
1,552,148	-				+0.7
1,552,148	-				-0.6
1,552,217	+				-0.7
1,552,218	-				-0.3
1,552,307	+		Sama_1266	0.21	+1.2
1,552,307	+		Sama_1266	0.21	-0.1
1,552,308	-		Sama_1266	0.21	+0.1
1,552,308	-		Sama_1266	0.21	+1.0
1,552,308	-		Sama_1266	0.21	-1.3
1,552,347	+		Sama_1266	0.26	+0.9
1,552,463	+		Sama_1266	0.41	+1.2
1,552,463	+		Sama_1266	0.41	+1.9
1,552,463	+		Sama_1266	0.41	-0.2
1,552,464	-		Sama_1266	0.41	-1.6
1,552,552	+		Sama_1266	0.53	+0.2
1,552,574	+		Sama_1266	0.55	+0.9
1,552,574	+		Sama_1266	0.55	+0.4
1,552,699	+		Sama_1266	0.71	-0.9
1,552,699	+		Sama_1266	0.71	+1.2
1,552,699	+		Sama_1266	0.71	+1.2
1,552,700	-		Sama_1266	0.72	+0.6
1,552,703	+		Sama_1266	0.72	+0.0
1,552,703	+		Sama_1266	0.72	-1.0
1,552,704	-		Sama_1266	0.72	+0.1
1,552,704	-		Sama_1266	0.72	+0.1
1,552,704	-		Sama_1266	0.72	-0.0
1,552,704	-		Sama_1266	0.72	-1.0
1,552,718	+		Sama_1266	0.74	-0.1
1,552,718	+		Sama_1266	0.74	+1.3
1,552,718	+		Sama_1266	0.74	+0.6
1,552,719	-		Sama_1266	0.74	-2.5
1,552,978	-				-0.0
1,552,984	+				-0.1
1,552,984	+				-0.2
1,552,987	+				+1.8
1,552,987	+				+1.7
1,552,988	-				+0.3
1,552,988	-				+1.0
1,553,036	+				+0.4
1,553,155	+		Sama_1267	0.12	+0.6
1,553,155	+		Sama_1267	0.12	-1.0
1,553,156	-		Sama_1267	0.12	+0.5
1,553,225	+		Sama_1267	0.18	-0.3
1,553,225	+		Sama_1267	0.18	-0.4
1,553,271	-		Sama_1267	0.22	-0.9
1,553,331	+		Sama_1267	0.27	-0.1
1,553,331	+		Sama_1267	0.27	+1.1
1,553,331	+		Sama_1267	0.27	+0.4
1,553,332	-		Sama_1267	0.27	+0.6
1,553,333	+		Sama_1267	0.27	+1.4
1,553,334	-		Sama_1267	0.27	-1.2
1,553,334	-		Sama_1267	0.27	-0.6
1,553,334	-		Sama_1267	0.27	+1.2
1,553,334	-		Sama_1267	0.27	+0.9
1,553,459	+		Sama_1267	0.38	-0.7
1,553,536	+		Sama_1267	0.45	+1.2
1,553,536	+		Sama_1267	0.45	-0.4
1,553,537	-		Sama_1267	0.45	+0.4
1,553,542	+		Sama_1267	0.45	+0.8
1,553,542	+		Sama_1267	0.45	-0.6
1,553,542	+		Sama_1267	0.45	-2.0
1,553,542	+		Sama_1267	0.45	+0.4
1,553,542	+		Sama_1267	0.45	-0.5
1,553,542	+		Sama_1267	0.45	-0.1
1,553,543	-		Sama_1267	0.45	+1.3
1,553,543	-		Sama_1267	0.45	-0.7
1,553,543	-		Sama_1267	0.45	-0.7
1,553,646	+		Sama_1267	0.54	+1.1
1,553,647	-		Sama_1267	0.55	-0.9
1,553,679	+		Sama_1267	0.57	+0.8
1,553,679	+		Sama_1267	0.57	-0.4
1,553,679	+		Sama_1267	0.57	+1.9
1,553,679	+		Sama_1267	0.57	-1.7
1,553,679	+		Sama_1267	0.57	-0.8
1,553,679	+		Sama_1267	0.57	-0.0
1,553,679	+		Sama_1267	0.57	+2.4
1,553,679	+		Sama_1267	0.57	+0.8
1,553,680	-		Sama_1267	0.57	-1.2
1,553,680	-		Sama_1267	0.57	+1.2
1,553,680	-		Sama_1267	0.57	+0.5
1,553,680	-		Sama_1267	0.57	-2.7
1,553,680	-		Sama_1267	0.57	-0.1
1,553,681	+		Sama_1267	0.58	-0.6
1,553,681	+		Sama_1267	0.58	+1.2
1,553,681	+		Sama_1267	0.58	-1.4
1,553,681	+		Sama_1267	0.58	+0.2
1,553,682	-		Sama_1267	0.58	+1.2
1,553,724	+		Sama_1267	0.61	-0.6
1,553,725	-		Sama_1267	0.61	+0.3
1,553,725	-		Sama_1267	0.61	+0.7
1,553,750	+		Sama_1267	0.64	+0.2
1,553,750	+		Sama_1267	0.64	-0.4
1,553,771	+		Sama_1267	0.65	-1.3
1,553,771	+		Sama_1267	0.65	-0.7
1,553,771	+		Sama_1267	0.65	+0.2
1,553,771	+		Sama_1267	0.65	-0.2
1,553,772	-		Sama_1267	0.65	-0.4
1,553,772	-		Sama_1267	0.65	+0.6
1,553,772	-		Sama_1267	0.65	-0.7
1,553,772	-		Sama_1267	0.65	-2.2
1,553,772	-		Sama_1267	0.65	+1.7
1,553,772	-		Sama_1267	0.65	-0.4
1,553,772	-		Sama_1267	0.65	-1.2
1,553,772	-		Sama_1267	0.65	-1.4
1,553,774	-		Sama_1267	0.66	+1.7
1,553,774	-		Sama_1267	0.66	+0.9
1,553,847	+		Sama_1267	0.72	+0.8
1,553,864	+		Sama_1267	0.73	+1.4
1,553,864	+		Sama_1267	0.73	-1.0
1,553,898	+		Sama_1267	0.76	+0.3
1,553,899	-		Sama_1267	0.77	+0.5
1,553,899	-		Sama_1267	0.77	+1.1