Experiment: NAG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0796 and Sama_0797 overlap by 4 nucleotides Sama_0797 and Sama_0798 are separated by 159 nucleotides Sama_0798 and Sama_0799 are separated by 3 nucleotides Sama_0799 and Sama_0800 are separated by 21 nucleotides
Sama_0796: Sama_0796 - hypothetical protein (RefSeq), at 981,287 to 982,396
_0796
Sama_0797: Sama_0797 - hypothetical protein (RefSeq), at 982,393 to 983,451
_0797
Sama_0798: Sama_0798 - hypothetical protein (RefSeq), at 983,611 to 984,123
_0798
Sama_0799: Sama_0799 - hypothetical protein (RefSeq), at 984,127 to 984,378
_0799
Sama_0800: Sama_0800 - hypothetical protein (RefSeq), at 984,400 to 984,750
_0800
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 983.452 kb on + strand at 983.452 kb on + strand at 983.452 kb on + strand at 983.452 kb on + strand at 983.453 kb on - strand at 983.453 kb on - strand at 983.482 kb on + strand at 983.483 kb on - strand at 983.483 kb on - strand at 983.518 kb on + strand at 983.518 kb on + strand at 983.563 kb on - strand at 983.563 kb on - strand at 983.563 kb on - strand at 983.563 kb on - strand at 983.579 kb on - strand at 983.594 kb on + strand at 983.595 kb on - strand at 983.595 kb on - strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.603 kb on + strand at 983.603 kb on + strand at 983.603 kb on + strand at 983.604 kb on - strand at 983.604 kb on - strand at 983.604 kb on - strand at 983.604 kb on - strand at 983.619 kb on + strand at 983.619 kb on + strand at 983.659 kb on + strand at 983.659 kb on + strand at 983.659 kb on + strand at 983.660 kb on - strand at 983.660 kb on - strand at 983.685 kb on + strand, within Sama_0798 at 983.686 kb on - strand, within Sama_0798 at 983.752 kb on + strand, within Sama_0798 at 983.752 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.891 kb on - strand, within Sama_0798 at 983.891 kb on - strand, within Sama_0798 at 984.010 kb on + strand, within Sama_0798 at 984.011 kb on - strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.056 kb on + strand, within Sama_0798 at 984.056 kb on + strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.123 kb on + strand at 984.124 kb on - strand at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.311 kb on + strand, within Sama_0799 at 984.311 kb on + strand, within Sama_0799 at 984.311 kb on + strand, within Sama_0799 at 984.312 kb on - strand, within Sama_0799 at 984.312 kb on - strand, within Sama_0799 at 984.351 kb on + strand, within Sama_0799 at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.359 kb on + strand at 984.359 kb on + strand at 984.359 kb on + strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.381 kb on + strand at 984.381 kb on + strand at 984.402 kb on - strand at 984.428 kb on + strand at 984.428 kb on + strand at 984.428 kb on + strand at 984.429 kb on - strand at 984.429 kb on - strand at 984.445 kb on - strand, within Sama_0800 at 984.445 kb on - strand, within Sama_0800
Per-strain Table
Position Strand Gene LocusTag Fraction NAG remove 983,452 + -1.2 983,452 + +0.8 983,452 + -0.1 983,452 + +0.6 983,453 - -0.8 983,453 - +0.0 983,482 + +0.7 983,483 - -0.5 983,483 - +2.2 983,518 + -0.2 983,518 + +0.5 983,563 - +0.4 983,563 - +0.5 983,563 - -2.1 983,563 - +0.7 983,579 - -0.1 983,594 + -0.3 983,595 - -1.5 983,595 - +0.2 983,597 + -0.2 983,597 + +0.7 983,597 + -1.0 983,597 + +0.1 983,597 + +1.5 983,598 - -0.0 983,598 - -0.3 983,598 - +1.0 983,603 + +0.6 983,603 + +0.8 983,603 + +0.9 983,604 - +1.1 983,604 - +0.2 983,604 - -0.5 983,604 - +1.1 983,619 + +0.7 983,619 + -2.3 983,659 + -0.2 983,659 + -1.6 983,659 + -0.4 983,660 - -0.2 983,660 - +2.2 983,685 + Sama_0798 0.14 -1.2 983,686 - Sama_0798 0.15 -1.3 983,752 + Sama_0798 0.27 -0.2 983,752 + Sama_0798 0.27 -1.2 983,867 + Sama_0798 0.50 +0.5 983,867 + Sama_0798 0.50 -0.5 983,867 + Sama_0798 0.50 -1.1 983,867 + Sama_0798 0.50 +1.6 983,868 - Sama_0798 0.50 -1.2 983,868 - Sama_0798 0.50 -0.6 983,868 - Sama_0798 0.50 +0.2 983,868 - Sama_0798 0.50 -1.5 983,891 - Sama_0798 0.55 -1.6 983,891 - Sama_0798 0.55 +1.4 984,010 + Sama_0798 0.78 -1.4 984,011 - Sama_0798 0.78 -0.8 984,048 + Sama_0798 0.85 -1.5 984,048 + Sama_0798 0.85 -0.5 984,048 + Sama_0798 0.85 -1.3 984,048 + Sama_0798 0.85 +0.2 984,048 + Sama_0798 0.85 +0.8 984,048 + Sama_0798 0.85 -0.4 984,048 + Sama_0798 0.85 -1.1 984,048 + Sama_0798 0.85 -0.7 984,048 + Sama_0798 0.85 -0.8 984,049 - Sama_0798 0.85 -1.5 984,049 - Sama_0798 0.85 -1.8 984,049 - Sama_0798 0.85 +1.0 984,049 - Sama_0798 0.85 -0.2 984,049 - Sama_0798 0.85 -0.8 984,049 - Sama_0798 0.85 -0.8 984,049 - Sama_0798 0.85 +0.2 984,049 - Sama_0798 0.85 -1.5 984,049 - Sama_0798 0.85 +1.4 984,049 - Sama_0798 0.85 -0.5 984,049 - Sama_0798 0.85 -0.8 984,049 - Sama_0798 0.85 -0.2 984,056 + Sama_0798 0.87 -0.4 984,056 + Sama_0798 0.87 -1.4 984,057 - Sama_0798 0.87 -2.2 984,057 - Sama_0798 0.87 -1.3 984,057 - Sama_0798 0.87 +0.8 984,057 - Sama_0798 0.87 +0.2 984,123 + +0.1 984,124 - -0.2 984,299 + Sama_0799 0.68 +1.1 984,299 + Sama_0799 0.68 +0.1 984,299 + Sama_0799 0.68 -0.8 984,299 + Sama_0799 0.68 +0.2 984,299 + Sama_0799 0.68 +0.2 984,300 - Sama_0799 0.69 -0.2 984,300 - Sama_0799 0.69 -1.0 984,300 - Sama_0799 0.69 +1.0 984,300 - Sama_0799 0.69 +3.4 984,300 - Sama_0799 0.69 -0.0 984,300 - Sama_0799 0.69 +0.5 984,300 - Sama_0799 0.69 +0.3 984,303 + Sama_0799 0.70 +0.6 984,303 + Sama_0799 0.70 +2.1 984,303 + Sama_0799 0.70 -0.8 984,303 + Sama_0799 0.70 +0.5 984,304 - Sama_0799 0.70 -0.2 984,304 - Sama_0799 0.70 -1.2 984,304 - Sama_0799 0.70 +0.4 984,304 - Sama_0799 0.70 -1.4 984,311 + Sama_0799 0.73 +0.6 984,311 + Sama_0799 0.73 -1.3 984,311 + Sama_0799 0.73 +0.0 984,312 - Sama_0799 0.73 -1.0 984,312 - Sama_0799 0.73 -1.6 984,351 + Sama_0799 0.89 +0.1 984,353 + +0.7 984,353 + -0.2 984,353 + +0.5 984,353 + +0.2 984,353 + -3.3 984,353 + -2.2 984,353 + +0.2 984,353 + -0.2 984,354 - +0.6 984,354 - -0.6 984,354 - -0.5 984,354 - +0.1 984,354 - -2.5 984,354 - +0.1 984,359 + +0.0 984,359 + -0.4 984,359 + -0.7 984,360 - -0.5 984,360 - +2.2 984,360 - +0.3 984,360 - +0.4 984,360 - +0.6 984,360 - +0.9 984,360 - -0.4 984,360 - -0.2 984,360 - +1.3 984,360 - +0.1 984,381 + -0.2 984,381 + -0.3 984,402 - -1.3 984,428 + -0.1 984,428 + -1.5 984,428 + -0.4 984,429 - -0.2 984,429 - +0.2 984,445 - Sama_0800 0.13 +0.0 984,445 - Sama_0800 0.13 -1.0
Or see this region's nucleotide sequence