Experiment: NAG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0600 and Sama_0601 are separated by 154 nucleotides Sama_0601 and Sama_0602 are separated by 556 nucleotides
Sama_0600: Sama_0600 - dipeptidyl peptidase IV (RefSeq), at 750,359 to 752,665
_0600
Sama_0601: Sama_0601 - two-component response regulator (RefSeq), at 752,820 to 753,536
_0601
Sama_0602: Sama_0602 - hypothetical protein (RefSeq), at 754,093 to 754,584
_0602
Position (kb) 752
753
754 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 751.991 kb on + strand, within Sama_0600 at 752.012 kb on + strand, within Sama_0600 at 752.012 kb on + strand, within Sama_0600 at 752.012 kb on + strand, within Sama_0600 at 752.012 kb on + strand, within Sama_0600 at 752.012 kb on + strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.013 kb on - strand, within Sama_0600 at 752.064 kb on - strand, within Sama_0600 at 752.069 kb on - strand, within Sama_0600 at 752.075 kb on + strand, within Sama_0600 at 752.076 kb on - strand, within Sama_0600 at 752.076 kb on - strand, within Sama_0600 at 752.093 kb on + strand, within Sama_0600 at 752.093 kb on + strand, within Sama_0600 at 752.100 kb on + strand, within Sama_0600 at 752.151 kb on - strand, within Sama_0600 at 752.151 kb on - strand, within Sama_0600 at 752.210 kb on + strand, within Sama_0600 at 752.211 kb on - strand, within Sama_0600 at 752.219 kb on - strand, within Sama_0600 at 752.242 kb on + strand, within Sama_0600 at 752.243 kb on - strand, within Sama_0600 at 752.243 kb on - strand, within Sama_0600 at 752.243 kb on - strand, within Sama_0600 at 752.243 kb on - strand, within Sama_0600 at 752.267 kb on + strand, within Sama_0600 at 752.276 kb on + strand, within Sama_0600 at 752.276 kb on + strand, within Sama_0600 at 752.276 kb on + strand, within Sama_0600 at 752.277 kb on - strand, within Sama_0600 at 752.360 kb on + strand, within Sama_0600 at 752.361 kb on - strand, within Sama_0600 at 752.361 kb on - strand, within Sama_0600 at 752.361 kb on - strand, within Sama_0600 at 752.361 kb on - strand, within Sama_0600 at 752.365 kb on + strand, within Sama_0600 at 752.372 kb on + strand, within Sama_0600 at 752.372 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.384 kb on + strand, within Sama_0600 at 752.385 kb on - strand, within Sama_0600 at 752.385 kb on - strand, within Sama_0600 at 752.385 kb on - strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.386 kb on + strand, within Sama_0600 at 752.417 kb on + strand, within Sama_0600 at 752.418 kb on - strand, within Sama_0600 at 752.418 kb on - strand, within Sama_0600 at 752.418 kb on - strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.419 kb on + strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.420 kb on - strand, within Sama_0600 at 752.474 kb on + strand at 752.474 kb on + strand at 752.474 kb on + strand at 752.474 kb on + strand at 752.474 kb on + strand at 752.475 kb on - strand at 752.475 kb on - strand at 752.475 kb on - strand at 752.475 kb on - strand at 752.525 kb on + strand at 752.525 kb on + strand at 752.561 kb on - strand at 752.561 kb on - strand at 752.561 kb on - strand at 752.611 kb on + strand at 752.611 kb on + strand at 752.611 kb on + strand at 752.612 kb on - strand at 752.612 kb on - strand at 752.621 kb on + strand at 752.621 kb on + strand at 752.621 kb on + strand at 752.622 kb on - strand at 752.622 kb on - strand at 752.631 kb on + strand at 752.663 kb on + strand at 752.664 kb on - strand at 752.664 kb on - strand at 752.664 kb on - strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.685 kb on + strand at 752.686 kb on - strand at 752.686 kb on - strand at 752.686 kb on - strand at 752.686 kb on - strand at 752.717 kb on + strand at 752.718 kb on - strand at 752.721 kb on + strand at 752.721 kb on + strand at 752.722 kb on - strand at 752.722 kb on - strand at 752.722 kb on - strand at 752.722 kb on - strand at 752.722 kb on - strand at 752.726 kb on - strand at 752.730 kb on - strand at 752.741 kb on + strand at 752.741 kb on + strand at 752.741 kb on + strand at 752.741 kb on + strand at 752.741 kb on + strand at 752.741 kb on + strand at 752.741 kb on + strand at 752.742 kb on - strand at 752.742 kb on - strand at 752.747 kb on - strand at 752.755 kb on - strand at 752.760 kb on + strand at 752.761 kb on - strand at 752.800 kb on + strand at 752.822 kb on - strand at 752.835 kb on - strand at 753.632 kb on - strand at 753.645 kb on - strand at 753.645 kb on - strand at 753.673 kb on - strand at 753.679 kb on - strand at 753.679 kb on - strand at 753.777 kb on - strand at 753.779 kb on - strand at 753.779 kb on - strand at 753.779 kb on - strand at 753.779 kb on - strand at 753.829 kb on + strand at 753.959 kb on - strand at 753.982 kb on + strand at 753.990 kb on - strand at 754.007 kb on - strand at 754.057 kb on + strand at 754.070 kb on + strand at 754.075 kb on + strand at 754.076 kb on - strand at 754.076 kb on - strand at 754.098 kb on + strand at 754.099 kb on - strand at 754.141 kb on + strand at 754.141 kb on + strand at 754.141 kb on + strand at 754.141 kb on + strand at 754.141 kb on + strand at 754.142 kb on - strand at 754.200 kb on + strand, within Sama_0602 at 754.200 kb on + strand, within Sama_0602 at 754.210 kb on + strand, within Sama_0602 at 754.210 kb on + strand, within Sama_0602 at 754.210 kb on + strand, within Sama_0602 at 754.210 kb on + strand, within Sama_0602 at 754.211 kb on - strand, within Sama_0602 at 754.211 kb on - strand, within Sama_0602 at 754.211 kb on - strand, within Sama_0602 at 754.211 kb on - strand, within Sama_0602 at 754.212 kb on + strand, within Sama_0602 at 754.212 kb on + strand, within Sama_0602 at 754.212 kb on + strand, within Sama_0602 at 754.212 kb on + strand, within Sama_0602 at 754.213 kb on - strand, within Sama_0602 at 754.213 kb on - strand, within Sama_0602 at 754.213 kb on - strand, within Sama_0602 at 754.218 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.280 kb on + strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.281 kb on - strand, within Sama_0602 at 754.301 kb on - strand, within Sama_0602 at 754.395 kb on + strand, within Sama_0602 at 754.395 kb on + strand, within Sama_0602 at 754.395 kb on + strand, within Sama_0602 at 754.396 kb on - strand, within Sama_0602 at 754.396 kb on - strand, within Sama_0602 at 754.396 kb on - strand, within Sama_0602 at 754.396 kb on - strand, within Sama_0602 at 754.396 kb on - strand, within Sama_0602 at 754.399 kb on + strand, within Sama_0602 at 754.399 kb on + strand, within Sama_0602 at 754.400 kb on - strand, within Sama_0602 at 754.417 kb on + strand, within Sama_0602 at 754.417 kb on + strand, within Sama_0602 at 754.417 kb on + strand, within Sama_0602 at 754.418 kb on - strand, within Sama_0602 at 754.418 kb on - strand, within Sama_0602 at 754.418 kb on - strand, within Sama_0602 at 754.418 kb on - strand, within Sama_0602 at 754.420 kb on + strand, within Sama_0602 at 754.420 kb on + strand, within Sama_0602 at 754.421 kb on - strand, within Sama_0602 at 754.421 kb on - strand, within Sama_0602 at 754.421 kb on - strand, within Sama_0602 at 754.421 kb on - strand, within Sama_0602 at 754.421 kb on - strand, within Sama_0602
Per-strain Table
Position Strand Gene LocusTag Fraction NAG remove 751,991 + Sama_0600 0.71 +0.4 752,012 + Sama_0600 0.72 +0.2 752,012 + Sama_0600 0.72 +0.6 752,012 + Sama_0600 0.72 -0.1 752,012 + Sama_0600 0.72 -1.1 752,012 + Sama_0600 0.72 +0.5 752,013 - Sama_0600 0.72 -0.1 752,013 - Sama_0600 0.72 -0.7 752,013 - Sama_0600 0.72 -0.4 752,013 - Sama_0600 0.72 -2.4 752,013 - Sama_0600 0.72 +1.1 752,013 - Sama_0600 0.72 -0.6 752,013 - Sama_0600 0.72 +0.2 752,013 - Sama_0600 0.72 -0.1 752,013 - Sama_0600 0.72 +1.0 752,064 - Sama_0600 0.74 +1.5 752,069 - Sama_0600 0.74 -0.2 752,075 + Sama_0600 0.74 +0.5 752,076 - Sama_0600 0.74 -2.4 752,076 - Sama_0600 0.74 +0.6 752,093 + Sama_0600 0.75 -0.8 752,093 + Sama_0600 0.75 +0.1 752,100 + Sama_0600 0.75 -1.1 752,151 - Sama_0600 0.78 +0.2 752,151 - Sama_0600 0.78 -0.7 752,210 + Sama_0600 0.80 -0.8 752,211 - Sama_0600 0.80 -1.7 752,219 - Sama_0600 0.81 +0.4 752,242 + Sama_0600 0.82 +0.3 752,243 - Sama_0600 0.82 -0.2 752,243 - Sama_0600 0.82 +0.6 752,243 - Sama_0600 0.82 +0.6 752,243 - Sama_0600 0.82 +1.4 752,267 + Sama_0600 0.83 +0.6 752,276 + Sama_0600 0.83 -3.0 752,276 + Sama_0600 0.83 -0.1 752,276 + Sama_0600 0.83 +0.1 752,277 - Sama_0600 0.83 +0.2 752,360 + Sama_0600 0.87 -0.6 752,361 - Sama_0600 0.87 -1.7 752,361 - Sama_0600 0.87 -1.7 752,361 - Sama_0600 0.87 -2.3 752,361 - Sama_0600 0.87 -0.3 752,365 + Sama_0600 0.87 -0.4 752,372 + Sama_0600 0.87 -0.1 752,372 + Sama_0600 0.87 +1.2 752,384 + Sama_0600 0.88 -0.5 752,384 + Sama_0600 0.88 +1.0 752,384 + Sama_0600 0.88 -0.7 752,384 + Sama_0600 0.88 +0.9 752,384 + Sama_0600 0.88 -1.2 752,384 + Sama_0600 0.88 +0.4 752,384 + Sama_0600 0.88 -1.5 752,385 - Sama_0600 0.88 +0.4 752,385 - Sama_0600 0.88 -0.1 752,385 - Sama_0600 0.88 +1.6 752,386 + Sama_0600 0.88 +0.7 752,386 + Sama_0600 0.88 -1.5 752,386 + Sama_0600 0.88 +2.1 752,386 + Sama_0600 0.88 +1.1 752,386 + Sama_0600 0.88 +0.1 752,386 + Sama_0600 0.88 -1.1 752,386 + Sama_0600 0.88 +2.3 752,386 + Sama_0600 0.88 +2.0 752,417 + Sama_0600 0.89 -0.4 752,418 - Sama_0600 0.89 +1.2 752,418 - Sama_0600 0.89 +0.6 752,418 - Sama_0600 0.89 -1.0 752,419 + Sama_0600 0.89 -1.4 752,419 + Sama_0600 0.89 -0.2 752,419 + Sama_0600 0.89 +0.4 752,419 + Sama_0600 0.89 -0.6 752,419 + Sama_0600 0.89 -0.8 752,419 + Sama_0600 0.89 -0.4 752,419 + Sama_0600 0.89 +0.3 752,420 - Sama_0600 0.89 +0.4 752,420 - Sama_0600 0.89 +0.8 752,420 - Sama_0600 0.89 -1.0 752,420 - Sama_0600 0.89 +0.2 752,420 - Sama_0600 0.89 -2.1 752,420 - Sama_0600 0.89 +0.9 752,420 - Sama_0600 0.89 -0.1 752,420 - Sama_0600 0.89 -0.4 752,474 + -2.5 752,474 + -0.1 752,474 + +1.2 752,474 + +1.1 752,474 + -0.2 752,475 - +0.5 752,475 - +0.7 752,475 - +0.2 752,475 - -0.6 752,525 + -3.0 752,525 + +0.0 752,561 - +0.6 752,561 - +0.7 752,561 - -0.3 752,611 + -0.9 752,611 + -1.4 752,611 + +0.2 752,612 - -0.3 752,612 - +0.2 752,621 + -0.2 752,621 + -0.6 752,621 + -1.5 752,622 - -0.7 752,622 - +0.2 752,631 + +0.8 752,663 + -0.4 752,664 - +0.3 752,664 - -0.4 752,664 - +1.1 752,685 + +0.7 752,685 + -2.5 752,685 + +0.7 752,685 + +0.1 752,685 + -0.2 752,685 + +0.6 752,685 + -1.9 752,685 + -1.0 752,685 + +0.0 752,686 - +0.9 752,686 - +1.4 752,686 - +1.9 752,686 - +1.3 752,717 + -1.3 752,718 - +0.9 752,721 + +0.2 752,721 + +1.7 752,722 - +0.6 752,722 - -0.3 752,722 - -0.9 752,722 - +1.2 752,722 - -1.0 752,726 - +1.2 752,730 - -0.4 752,741 + +1.0 752,741 + -2.0 752,741 + -1.5 752,741 + +0.3 752,741 + -1.4 752,741 + +0.4 752,741 + -1.4 752,742 - +0.4 752,742 - -0.2 752,747 - +2.3 752,755 - -0.8 752,760 + +0.5 752,761 - +0.1 752,800 + +0.7 752,822 - +2.4 752,835 - +3.0 753,632 - +2.8 753,645 - +1.0 753,645 - +0.8 753,673 - +1.2 753,679 - +1.3 753,679 - -0.2 753,777 - +2.0 753,779 - +0.7 753,779 - +0.7 753,779 - +1.2 753,779 - -1.4 753,829 + +5.4 753,959 - +0.9 753,982 + +1.9 753,990 - +0.4 754,007 - -1.0 754,057 + -3.9 754,070 + -0.2 754,075 + +1.4 754,076 - -0.1 754,076 - -0.3 754,098 + +0.1 754,099 - -0.4 754,141 + +1.1 754,141 + +0.5 754,141 + +0.6 754,141 + +0.8 754,141 + -0.6 754,142 - -0.7 754,200 + Sama_0602 0.22 +2.1 754,200 + Sama_0602 0.22 -0.7 754,210 + Sama_0602 0.24 -0.1 754,210 + Sama_0602 0.24 +0.9 754,210 + Sama_0602 0.24 +0.6 754,210 + Sama_0602 0.24 +0.4 754,211 - Sama_0602 0.24 -0.4 754,211 - Sama_0602 0.24 +0.2 754,211 - Sama_0602 0.24 +1.9 754,211 - Sama_0602 0.24 +0.2 754,212 + Sama_0602 0.24 +0.9 754,212 + Sama_0602 0.24 +2.9 754,212 + Sama_0602 0.24 +2.1 754,212 + Sama_0602 0.24 +0.7 754,213 - Sama_0602 0.24 -1.4 754,213 - Sama_0602 0.24 -0.4 754,213 - Sama_0602 0.24 +0.2 754,218 + Sama_0602 0.25 -0.4 754,280 + Sama_0602 0.38 +0.7 754,280 + Sama_0602 0.38 +0.9 754,280 + Sama_0602 0.38 -1.7 754,280 + Sama_0602 0.38 +0.7 754,280 + Sama_0602 0.38 +1.0 754,280 + Sama_0602 0.38 +2.1 754,280 + Sama_0602 0.38 -0.2 754,280 + Sama_0602 0.38 +0.6 754,280 + Sama_0602 0.38 +1.1 754,280 + Sama_0602 0.38 +0.7 754,280 + Sama_0602 0.38 -0.1 754,281 - Sama_0602 0.38 -0.4 754,281 - Sama_0602 0.38 +1.1 754,281 - Sama_0602 0.38 +1.1 754,281 - Sama_0602 0.38 +0.1 754,281 - Sama_0602 0.38 -0.6 754,281 - Sama_0602 0.38 -1.1 754,281 - Sama_0602 0.38 -1.3 754,281 - Sama_0602 0.38 -0.1 754,301 - Sama_0602 0.42 -0.7 754,395 + Sama_0602 0.61 +1.5 754,395 + Sama_0602 0.61 +1.0 754,395 + Sama_0602 0.61 +0.3 754,396 - Sama_0602 0.62 -2.3 754,396 - Sama_0602 0.62 -0.6 754,396 - Sama_0602 0.62 +0.3 754,396 - Sama_0602 0.62 -0.9 754,396 - Sama_0602 0.62 -1.9 754,399 + Sama_0602 0.62 +0.6 754,399 + Sama_0602 0.62 +1.0 754,400 - Sama_0602 0.62 +1.1 754,417 + Sama_0602 0.66 +0.6 754,417 + Sama_0602 0.66 +0.9 754,417 + Sama_0602 0.66 +1.1 754,418 - Sama_0602 0.66 -1.7 754,418 - Sama_0602 0.66 +0.7 754,418 - Sama_0602 0.66 -0.1 754,418 - Sama_0602 0.66 -0.3 754,420 + Sama_0602 0.66 +0.4 754,420 + Sama_0602 0.66 +0.9 754,421 - Sama_0602 0.67 -2.4 754,421 - Sama_0602 0.67 +0.9 754,421 - Sama_0602 0.67 +0.1 754,421 - Sama_0602 0.67 -0.4 754,421 - Sama_0602 0.67 -0.8
Or see this region's nucleotide sequence