Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3295 and Dsui_3296 are separated by 371 nucleotides Dsui_3296 and Dsui_3297 are separated by 84 nucleotides Dsui_3297 and Dsui_3298 are separated by 122 nucleotides
Dsui_3295: Dsui_3295 - isocitrate dehydrogenase, NADP-dependent, monomeric type, at 3,535,470 to 3,537,710
_3295
Dsui_3296: Dsui_3296 - isocitrate dehydrogenase, NADP-dependent, prokaryotic type, at 3,538,082 to 3,539,308
_3296
Dsui_3297: Dsui_3297 - nitroreductase, at 3,539,393 to 3,540,046
_3297
Dsui_3298: Dsui_3298 - Kef-type K+ transport system, predicted NAD-binding component, at 3,540,169 to 3,541,869
_3298
Position (kb)
3538
3539
3540 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3537.137 kb on + strand, within Dsui_3295 at 3537.316 kb on + strand, within Dsui_3295 at 3537.473 kb on + strand, within Dsui_3295 at 3537.580 kb on + strand at 3537.674 kb on + strand at 3537.725 kb on + strand at 3537.732 kb on + strand at 3537.745 kb on - strand at 3537.928 kb on - strand at 3537.975 kb on - strand at 3538.012 kb on + strand at 3538.056 kb on - strand at 3538.063 kb on - strand at 3538.079 kb on - strand at 3538.086 kb on + strand at 3538.093 kb on + strand at 3538.101 kb on - strand at 3538.110 kb on - strand at 3538.110 kb on - strand at 3538.165 kb on + strand at 3538.202 kb on + strand at 3538.205 kb on - strand at 3538.260 kb on - strand, within Dsui_3296 at 3538.300 kb on + strand, within Dsui_3296 at 3538.308 kb on - strand, within Dsui_3296 at 3538.310 kb on + strand, within Dsui_3296 at 3538.324 kb on + strand, within Dsui_3296 at 3538.344 kb on + strand, within Dsui_3296 at 3538.352 kb on - strand, within Dsui_3296 at 3538.410 kb on + strand, within Dsui_3296 at 3538.418 kb on - strand, within Dsui_3296 at 3538.471 kb on + strand, within Dsui_3296 at 3538.479 kb on - strand, within Dsui_3296 at 3538.499 kb on - strand, within Dsui_3296 at 3538.500 kb on + strand, within Dsui_3296 at 3538.500 kb on + strand, within Dsui_3296 at 3538.508 kb on - strand, within Dsui_3296 at 3538.518 kb on - strand, within Dsui_3296 at 3538.541 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.583 kb on - strand, within Dsui_3296 at 3538.583 kb on - strand, within Dsui_3296 at 3538.587 kb on + strand, within Dsui_3296 at 3538.714 kb on + strand, within Dsui_3296 at 3538.805 kb on + strand, within Dsui_3296 at 3538.813 kb on - strand, within Dsui_3296 at 3538.816 kb on + strand, within Dsui_3296 at 3538.838 kb on + strand, within Dsui_3296 at 3538.843 kb on + strand, within Dsui_3296 at 3538.941 kb on + strand, within Dsui_3296 at 3538.974 kb on - strand, within Dsui_3296 at 3539.005 kb on + strand, within Dsui_3296 at 3539.048 kb on - strand, within Dsui_3296 at 3539.048 kb on - strand, within Dsui_3296 at 3539.048 kb on - strand at 3539.101 kb on + strand, within Dsui_3296 at 3539.101 kb on + strand, within Dsui_3296 at 3539.226 kb on - strand at 3539.266 kb on + strand at 3539.266 kb on + strand at 3539.302 kb on + strand at 3539.310 kb on - strand at 3539.476 kb on + strand, within Dsui_3297 at 3539.543 kb on + strand, within Dsui_3297 at 3539.543 kb on + strand, within Dsui_3297 at 3539.621 kb on - strand, within Dsui_3297 at 3539.703 kb on + strand, within Dsui_3297 at 3539.773 kb on + strand, within Dsui_3297 at 3539.806 kb on + strand at 3539.824 kb on + strand, within Dsui_3297 at 3539.832 kb on - strand, within Dsui_3297 at 3539.873 kb on + strand, within Dsui_3297 at 3539.873 kb on + strand, within Dsui_3297 at 3539.950 kb on - strand, within Dsui_3297 at 3540.012 kb on + strand at 3540.020 kb on - strand at 3540.020 kb on - strand at 3540.100 kb on + strand at 3540.175 kb on + strand at 3540.220 kb on - strand at 3540.233 kb on + strand at 3540.283 kb on - strand at 3540.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 3,537,137 + Dsui_3295 0.74 -1.3 3,537,316 + Dsui_3295 0.82 -2.2 3,537,473 + Dsui_3295 0.89 -2.3 3,537,580 + -1.6 3,537,674 + -0.3 3,537,725 + +1.8 3,537,732 + +0.2 3,537,745 - +0.5 3,537,928 - +0.3 3,537,975 - +0.1 3,538,012 + +0.7 3,538,056 - +0.3 3,538,063 - +0.3 3,538,079 - -0.6 3,538,086 + +0.1 3,538,093 + +0.7 3,538,101 - -0.1 3,538,110 - +0.2 3,538,110 - -0.0 3,538,165 + +0.4 3,538,202 + +0.2 3,538,205 - +0.2 3,538,260 - Dsui_3296 0.15 -0.2 3,538,300 + Dsui_3296 0.18 -0.4 3,538,308 - Dsui_3296 0.18 +0.8 3,538,310 + Dsui_3296 0.19 +0.0 3,538,324 + Dsui_3296 0.20 +0.2 3,538,344 + Dsui_3296 0.21 -0.0 3,538,352 - Dsui_3296 0.22 -0.5 3,538,410 + Dsui_3296 0.27 -0.0 3,538,418 - Dsui_3296 0.27 -0.9 3,538,471 + Dsui_3296 0.32 +0.4 3,538,479 - Dsui_3296 0.32 +0.4 3,538,499 - Dsui_3296 0.34 +2.0 3,538,500 + Dsui_3296 0.34 +0.0 3,538,500 + Dsui_3296 0.34 +0.2 3,538,508 - Dsui_3296 0.35 -2.7 3,538,518 - Dsui_3296 0.36 +0.6 3,538,541 + Dsui_3296 0.37 +0.1 3,538,575 + Dsui_3296 0.40 +0.2 3,538,575 + Dsui_3296 0.40 +0.4 3,538,575 + Dsui_3296 0.40 -0.1 3,538,575 + Dsui_3296 0.40 +0.2 3,538,583 - Dsui_3296 0.41 +0.3 3,538,583 - Dsui_3296 0.41 +0.8 3,538,587 + Dsui_3296 0.41 -0.4 3,538,714 + Dsui_3296 0.52 -0.2 3,538,805 + Dsui_3296 0.59 +0.2 3,538,813 - Dsui_3296 0.60 -0.2 3,538,816 + Dsui_3296 0.60 +0.3 3,538,838 + Dsui_3296 0.62 -0.3 3,538,843 + Dsui_3296 0.62 +0.2 3,538,941 + Dsui_3296 0.70 -0.2 3,538,974 - Dsui_3296 0.73 +1.0 3,539,005 + Dsui_3296 0.75 +0.1 3,539,048 - Dsui_3296 0.79 +0.4 3,539,048 - Dsui_3296 0.79 +0.1 3,539,048 - +1.4 3,539,101 + Dsui_3296 0.83 +0.2 3,539,101 + Dsui_3296 0.83 -0.1 3,539,226 - +0.1 3,539,266 + -0.1 3,539,266 + -0.6 3,539,302 + -0.2 3,539,310 - +0.4 3,539,476 + Dsui_3297 0.13 +0.0 3,539,543 + Dsui_3297 0.23 +0.3 3,539,543 + Dsui_3297 0.23 +0.8 3,539,621 - Dsui_3297 0.35 +0.3 3,539,703 + Dsui_3297 0.47 -0.1 3,539,773 + Dsui_3297 0.58 +0.8 3,539,806 + +2.0 3,539,824 + Dsui_3297 0.66 +0.1 3,539,832 - Dsui_3297 0.67 -0.1 3,539,873 + Dsui_3297 0.73 -1.1 3,539,873 + Dsui_3297 0.73 +0.0 3,539,950 - Dsui_3297 0.85 +0.2 3,540,012 + -0.4 3,540,020 - +0.3 3,540,020 - -0.4 3,540,100 + +0.2 3,540,175 + +0.0 3,540,220 - +0.9 3,540,233 + +2.0 3,540,283 - +0.1 3,540,300 + -0.6
Or see this region's nucleotide sequence