Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3193 and Dsui_3194 overlap by 4 nucleotides Dsui_3194 and Dsui_3195 overlap by 4 nucleotides Dsui_3195 and Dsui_3196 are separated by 130 nucleotides
Dsui_3193: Dsui_3193 - phosphoribosylanthranilate isomerase, at 3,427,581 to 3,428,228
_3193
Dsui_3194: Dsui_3194 - pseudouridylate synthase I, at 3,428,225 to 3,429,052
_3194
Dsui_3195: Dsui_3195 - Cobalt transport protein, at 3,429,049 to 3,429,678
_3195
Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817
_3196
Position (kb)
3429
3430 Strain fitness (log2 ratio)
-1
0
1
2 at 3428.262 kb on - strand at 3428.313 kb on - strand, within Dsui_3194 at 3428.394 kb on + strand, within Dsui_3194 at 3428.402 kb on - strand, within Dsui_3194 at 3428.427 kb on - strand, within Dsui_3194 at 3428.454 kb on - strand, within Dsui_3194 at 3428.574 kb on + strand at 3428.582 kb on - strand at 3428.582 kb on - strand, within Dsui_3194 at 3428.621 kb on - strand, within Dsui_3194 at 3428.665 kb on - strand, within Dsui_3194 at 3428.683 kb on - strand, within Dsui_3194 at 3428.992 kb on + strand at 3428.993 kb on + strand at 3429.012 kb on - strand at 3429.027 kb on - strand at 3429.027 kb on - strand at 3429.066 kb on - strand at 3429.290 kb on - strand, within Dsui_3195 at 3429.407 kb on - strand at 3429.431 kb on - strand at 3429.581 kb on + strand at 3429.826 kb on + strand at 3429.897 kb on - strand at 3430.022 kb on - strand at 3430.068 kb on + strand at 3430.377 kb on - strand, within Dsui_3196 at 3430.416 kb on + strand at 3430.417 kb on + strand, within Dsui_3196 at 3430.482 kb on + strand, within Dsui_3196 at 3430.556 kb on - strand, within Dsui_3196 at 3430.556 kb on - strand, within Dsui_3196 at 3430.604 kb on + strand, within Dsui_3196 at 3430.622 kb on + strand, within Dsui_3196 at 3430.625 kb on - strand, within Dsui_3196 at 3430.653 kb on + strand, within Dsui_3196 at 3430.661 kb on + strand, within Dsui_3196 at 3430.673 kb on - strand, within Dsui_3196
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 3,428,262 - -0.0 3,428,313 - Dsui_3194 0.11 -1.1 3,428,394 + Dsui_3194 0.20 +1.2 3,428,402 - Dsui_3194 0.21 -1.4 3,428,427 - Dsui_3194 0.24 -1.2 3,428,454 - Dsui_3194 0.28 -0.7 3,428,574 + +0.6 3,428,582 - +2.0 3,428,582 - Dsui_3194 0.43 -1.2 3,428,621 - Dsui_3194 0.48 -0.2 3,428,665 - Dsui_3194 0.53 -0.7 3,428,683 - Dsui_3194 0.55 -0.3 3,428,992 + +1.0 3,428,993 + +2.0 3,429,012 - +0.3 3,429,027 - +0.6 3,429,027 - +0.2 3,429,066 - -0.5 3,429,290 - Dsui_3195 0.38 -1.0 3,429,407 - +2.0 3,429,431 - +1.0 3,429,581 + +0.4 3,429,826 + +0.2 3,429,897 - -0.2 3,430,022 - -0.4 3,430,068 + +0.6 3,430,377 - Dsui_3196 0.19 +0.0 3,430,416 + -0.4 3,430,417 + Dsui_3196 0.20 +0.3 3,430,482 + Dsui_3196 0.22 +0.7 3,430,556 - Dsui_3196 0.25 -0.5 3,430,556 - Dsui_3196 0.25 -0.1 3,430,604 + Dsui_3196 0.26 -0.3 3,430,622 + Dsui_3196 0.27 +0.2 3,430,625 - Dsui_3196 0.27 +0.5 3,430,653 + Dsui_3196 0.28 -1.4 3,430,661 + Dsui_3196 0.28 -0.5 3,430,673 - Dsui_3196 0.29 +0.5
Or see this region's nucleotide sequence