Experiment: defined media with 30 mM sodium lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2608 and Dsui_2609 are separated by 9 nucleotides Dsui_2609 and Dsui_2610 are separated by 78 nucleotides Dsui_2610 and Dsui_2611 are separated by 7 nucleotides Dsui_2611 and Dsui_2612 overlap by 4 nucleotides
Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610
_2608
Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883
_2609
Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330
_2610
Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667
_2611
Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197
_2612
Position (kb)
2764
2765 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2763.636 kb on + strand, within Dsui_2608 at 2763.644 kb on - strand, within Dsui_2608 at 2763.793 kb on - strand, within Dsui_2608 at 2763.798 kb on - strand, within Dsui_2608 at 2763.832 kb on + strand, within Dsui_2608 at 2763.913 kb on + strand, within Dsui_2608 at 2764.087 kb on - strand, within Dsui_2608 at 2764.109 kb on + strand, within Dsui_2608 at 2764.144 kb on + strand, within Dsui_2608 at 2764.158 kb on + strand, within Dsui_2608 at 2764.246 kb on - strand, within Dsui_2608 at 2764.252 kb on - strand, within Dsui_2608 at 2764.657 kb on + strand, within Dsui_2609 at 2764.727 kb on - strand, within Dsui_2609 at 2764.755 kb on - strand, within Dsui_2609 at 2764.797 kb on + strand, within Dsui_2609 at 2764.806 kb on + strand at 2764.845 kb on + strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand at 2764.994 kb on - strand at 2765.068 kb on - strand, within Dsui_2610 at 2765.125 kb on - strand, within Dsui_2610 at 2765.178 kb on - strand, within Dsui_2610 at 2765.193 kb on - strand at 2765.195 kb on + strand, within Dsui_2610 at 2765.254 kb on - strand, within Dsui_2610 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.427 kb on + strand at 2765.474 kb on - strand, within Dsui_2611 at 2765.564 kb on - strand, within Dsui_2611 at 2765.638 kb on - strand at 2765.638 kb on - strand at 2765.670 kb on + strand at 2765.736 kb on - strand, within Dsui_2612 at 2765.792 kb on - strand at 2765.792 kb on - strand, within Dsui_2612
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate remove 2,763,636 + Dsui_2608 0.60 -2.5 2,763,644 - Dsui_2608 0.61 +0.5 2,763,793 - Dsui_2608 0.67 -1.4 2,763,798 - Dsui_2608 0.67 -1.6 2,763,832 + Dsui_2608 0.68 -0.6 2,763,913 + Dsui_2608 0.72 -0.6 2,764,087 - Dsui_2608 0.79 -0.9 2,764,109 + Dsui_2608 0.80 +0.2 2,764,144 + Dsui_2608 0.81 +0.0 2,764,158 + Dsui_2608 0.82 -1.4 2,764,246 - Dsui_2608 0.85 -0.0 2,764,252 - Dsui_2608 0.85 -1.5 2,764,657 + Dsui_2609 0.14 -0.4 2,764,727 - Dsui_2609 0.41 -0.5 2,764,755 - Dsui_2609 0.51 -1.4 2,764,797 + Dsui_2609 0.67 +0.8 2,764,806 + -0.6 2,764,845 + Dsui_2609 0.85 -3.4 2,764,853 - Dsui_2609 0.88 +0.8 2,764,853 - Dsui_2609 0.88 -0.8 2,764,853 - +0.2 2,764,994 - -0.3 2,765,068 - Dsui_2610 0.29 -0.6 2,765,125 - Dsui_2610 0.44 -0.4 2,765,178 - Dsui_2610 0.59 -0.3 2,765,193 - +0.6 2,765,195 + Dsui_2610 0.63 -1.8 2,765,254 - Dsui_2610 0.79 -2.2 2,765,425 - Dsui_2611 0.26 -0.4 2,765,425 - Dsui_2611 0.26 -0.2 2,765,425 - Dsui_2611 0.26 -0.4 2,765,427 + -0.8 2,765,474 - Dsui_2611 0.41 -0.7 2,765,564 - Dsui_2611 0.68 -0.6 2,765,638 - -0.0 2,765,638 - -0.7 2,765,670 + -1.2 2,765,736 - Dsui_2612 0.13 -0.2 2,765,792 - +1.2 2,765,792 - Dsui_2612 0.24 -0.9
Or see this region's nucleotide sequence