Strain Fitness in Dechlorosoma suillum PS around Dsui_2609

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2608 and Dsui_2609 are separated by 9 nucleotidesDsui_2609 and Dsui_2610 are separated by 78 nucleotidesDsui_2610 and Dsui_2611 are separated by 7 nucleotidesDsui_2611 and Dsui_2612 overlap by 4 nucleotides Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610 _2608 Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883 _2609 Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330 _2610 Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667 _2611 Dsui_2612: Dsui_2612 - hypothetical protein, at 2,765,664 to 2,766,197 _2612 Position (kb) 2764 2765Strain fitness (log2 ratio) -3 -2 -1 0 1at 2763.636 kb on + strand, within Dsui_2608at 2763.644 kb on - strand, within Dsui_2608at 2763.793 kb on - strand, within Dsui_2608at 2763.798 kb on - strand, within Dsui_2608at 2763.832 kb on + strand, within Dsui_2608at 2763.913 kb on + strand, within Dsui_2608at 2764.087 kb on - strand, within Dsui_2608at 2764.109 kb on + strand, within Dsui_2608at 2764.144 kb on + strand, within Dsui_2608at 2764.158 kb on + strand, within Dsui_2608at 2764.246 kb on - strand, within Dsui_2608at 2764.252 kb on - strand, within Dsui_2608at 2764.657 kb on + strand, within Dsui_2609at 2764.727 kb on - strand, within Dsui_2609at 2764.755 kb on - strand, within Dsui_2609at 2764.797 kb on + strand, within Dsui_2609at 2764.806 kb on + strandat 2764.845 kb on + strand, within Dsui_2609at 2764.853 kb on - strand, within Dsui_2609at 2764.853 kb on - strand, within Dsui_2609at 2764.853 kb on - strandat 2764.994 kb on - strandat 2765.068 kb on - strand, within Dsui_2610at 2765.125 kb on - strand, within Dsui_2610at 2765.178 kb on - strand, within Dsui_2610at 2765.193 kb on - strandat 2765.195 kb on + strand, within Dsui_2610at 2765.254 kb on - strand, within Dsui_2610at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.427 kb on + strandat 2765.474 kb on - strand, within Dsui_2611at 2765.564 kb on - strand, within Dsui_2611at 2765.638 kb on - strandat 2765.638 kb on - strandat 2765.670 kb on + strandat 2765.736 kb on - strand, within Dsui_2612at 2765.792 kb on - strandat 2765.792 kb on - strand, within Dsui_2612

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,763,636 + Dsui_2608 0.60 -2.5
2,763,644 - Dsui_2608 0.61 +0.5
2,763,793 - Dsui_2608 0.67 -1.4
2,763,798 - Dsui_2608 0.67 -1.6
2,763,832 + Dsui_2608 0.68 -0.6
2,763,913 + Dsui_2608 0.72 -0.6
2,764,087 - Dsui_2608 0.79 -0.9
2,764,109 + Dsui_2608 0.80 +0.2
2,764,144 + Dsui_2608 0.81 +0.0
2,764,158 + Dsui_2608 0.82 -1.4
2,764,246 - Dsui_2608 0.85 -0.0
2,764,252 - Dsui_2608 0.85 -1.5
2,764,657 + Dsui_2609 0.14 -0.4
2,764,727 - Dsui_2609 0.41 -0.5
2,764,755 - Dsui_2609 0.51 -1.4
2,764,797 + Dsui_2609 0.67 +0.8
2,764,806 + -0.6
2,764,845 + Dsui_2609 0.85 -3.4
2,764,853 - Dsui_2609 0.88 +0.8
2,764,853 - Dsui_2609 0.88 -0.8
2,764,853 - +0.2
2,764,994 - -0.3
2,765,068 - Dsui_2610 0.29 -0.6
2,765,125 - Dsui_2610 0.44 -0.4
2,765,178 - Dsui_2610 0.59 -0.3
2,765,193 - +0.6
2,765,195 + Dsui_2610 0.63 -1.8
2,765,254 - Dsui_2610 0.79 -2.2
2,765,425 - Dsui_2611 0.26 -0.4
2,765,425 - Dsui_2611 0.26 -0.2
2,765,425 - Dsui_2611 0.26 -0.4
2,765,427 + -0.8
2,765,474 - Dsui_2611 0.41 -0.7
2,765,564 - Dsui_2611 0.68 -0.6
2,765,638 - -0.0
2,765,638 - -0.7
2,765,670 + -1.2
2,765,736 - Dsui_2612 0.13 -0.2
2,765,792 - +1.2
2,765,792 - Dsui_2612 0.24 -0.9

Or see this region's nucleotide sequence