Strain Fitness in Dechlorosoma suillum PS around Dsui_2585

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2585 and Dsui_2586 overlap by 4 nucleotidesDsui_2586 and Dsui_2587 are separated by 1 nucleotides Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075 _2585 Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058 _2586 Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385 _2587 Position (kb) 2738 2739 2740Strain fitness (log2 ratio) -3 -2 -1 0 1at 2737.373 kb on + strandat 2737.463 kb on - strandat 2737.553 kb on - strandat 2737.660 kb on - strandat 2737.668 kb on - strandat 2737.708 kb on - strandat 2737.756 kb on - strandat 2737.756 kb on - strandat 2737.789 kb on - strandat 2737.792 kb on + strandat 2737.819 kb on - strandat 2737.819 kb on - strandat 2737.832 kb on + strandat 2737.961 kb on - strandat 2737.987 kb on + strandat 2737.995 kb on - strandat 2738.012 kb on - strandat 2738.065 kb on - strandat 2738.157 kb on + strandat 2738.225 kb on - strandat 2738.225 kb on - strandat 2738.329 kb on - strandat 2738.329 kb on - strandat 2738.337 kb on + strandat 2738.414 kb on - strandat 2738.423 kb on - strandat 2738.435 kb on - strandat 2738.507 kb on + strand, within Dsui_2585at 2738.507 kb on + strand, within Dsui_2585at 2738.515 kb on + strand, within Dsui_2585at 2738.515 kb on - strand, within Dsui_2585at 2738.515 kb on - strand, within Dsui_2585at 2738.557 kb on - strand, within Dsui_2585at 2738.593 kb on - strand, within Dsui_2585at 2738.794 kb on - strand, within Dsui_2585at 2738.828 kb on + strand, within Dsui_2585at 2738.925 kb on + strand, within Dsui_2585at 2738.943 kb on + strand, within Dsui_2585at 2738.943 kb on + strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.951 kb on - strand, within Dsui_2585at 2738.990 kb on + strand, within Dsui_2585at 2738.990 kb on + strand, within Dsui_2585at 2739.138 kb on - strandat 2739.165 kb on + strandat 2739.171 kb on - strand, within Dsui_2586at 2739.258 kb on - strand, within Dsui_2586at 2739.258 kb on - strand, within Dsui_2586at 2739.289 kb on + strand, within Dsui_2586at 2739.361 kb on + strand, within Dsui_2586at 2739.427 kb on + strand, within Dsui_2586at 2739.430 kb on - strand, within Dsui_2586at 2739.773 kb on - strand, within Dsui_2586at 2739.899 kb on + strand, within Dsui_2586at 2739.942 kb on - strand, within Dsui_2586at 2740.011 kb on - strandat 2740.069 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,737,373 + -1.2
2,737,463 - -0.2
2,737,553 - -1.5
2,737,660 - -0.5
2,737,668 - -0.4
2,737,708 - -0.6
2,737,756 - -0.1
2,737,756 - -0.5
2,737,789 - -0.7
2,737,792 + -3.1
2,737,819 - -0.4
2,737,819 - -0.1
2,737,832 + -0.4
2,737,961 - -0.5
2,737,987 + -1.1
2,737,995 - -1.3
2,738,012 - -0.2
2,738,065 - -0.5
2,738,157 + +0.9
2,738,225 - -0.9
2,738,225 - -0.4
2,738,329 - -1.9
2,738,329 - -2.2
2,738,337 + -0.2
2,738,414 - +0.8
2,738,423 - -1.8
2,738,435 - -0.6
2,738,507 + Dsui_2585 0.19 -0.1
2,738,507 + Dsui_2585 0.19 -1.2
2,738,515 + Dsui_2585 0.20 -0.6
2,738,515 - Dsui_2585 0.20 -1.4
2,738,515 - Dsui_2585 0.20 -0.7
2,738,557 - Dsui_2585 0.26 -1.0
2,738,593 - Dsui_2585 0.31 -0.2
2,738,794 - Dsui_2585 0.60 +0.1
2,738,828 + Dsui_2585 0.65 -0.3
2,738,925 + Dsui_2585 0.79 -1.1
2,738,943 + Dsui_2585 0.81 +0.4
2,738,943 + Dsui_2585 0.81 -0.0
2,738,951 - Dsui_2585 0.82 -0.6
2,738,951 - Dsui_2585 0.82 -0.8
2,738,951 - Dsui_2585 0.82 -1.6
2,738,951 - Dsui_2585 0.82 -2.7
2,738,990 + Dsui_2585 0.88 -0.9
2,738,990 + Dsui_2585 0.88 -1.1
2,739,138 - -0.9
2,739,165 + -0.4
2,739,171 - Dsui_2586 0.10 +0.3
2,739,258 - Dsui_2586 0.19 -0.7
2,739,258 - Dsui_2586 0.19 -0.9
2,739,289 + Dsui_2586 0.22 +0.4
2,739,361 + Dsui_2586 0.29 +0.1
2,739,427 + Dsui_2586 0.36 -1.2
2,739,430 - Dsui_2586 0.36 -0.5
2,739,773 - Dsui_2586 0.71 +0.1
2,739,899 + Dsui_2586 0.84 -1.1
2,739,942 - Dsui_2586 0.88 -1.6
2,740,011 - -1.7
2,740,069 - -2.2

Or see this region's nucleotide sequence