Strain Fitness in Dechlorosoma suillum PS around Dsui_2483

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2481 and Dsui_2482 are separated by 71 nucleotidesDsui_2482 and Dsui_2483 overlap by 11 nucleotidesDsui_2483 and Dsui_2484 are separated by 28 nucleotidesDsui_2484 and Dsui_2485 are separated by 33 nucleotides Dsui_2481: Dsui_2481 - DNA polymerase III, epsilon subunit, at 2,631,750 to 2,632,469 _2481 Dsui_2482: Dsui_2482 - ribonuclease HI, at 2,632,541 to 2,632,993 _2482 Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711 _2483 Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543 _2484 Dsui_2485: Dsui_2485 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 2,634,577 to 2,634,942 _2485 Position (kb) 2632 2633 2634Strain fitness (log2 ratio) -1 0 1 2at 2632.499 kb on - strandat 2632.524 kb on - strandat 2632.524 kb on - strandat 2632.545 kb on - strandat 2632.975 kb on - strandat 2632.998 kb on - strandat 2633.732 kb on - strandat 2633.755 kb on - strandat 2633.758 kb on - strandat 2633.775 kb on - strandat 2633.829 kb on - strand, within Dsui_2484at 2634.129 kb on + strand, within Dsui_2484at 2634.142 kb on + strand, within Dsui_2484at 2634.379 kb on - strand, within Dsui_2484at 2634.404 kb on + strand, within Dsui_2484at 2634.515 kb on + strandat 2634.537 kb on + strandat 2634.611 kb on + strandat 2634.656 kb on - strand, within Dsui_2485at 2634.659 kb on + strand, within Dsui_2485at 2634.708 kb on + strand, within Dsui_2485

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,632,499 - +0.5
2,632,524 - +0.7
2,632,524 - +0.9
2,632,545 - +0.0
2,632,975 - -0.3
2,632,998 - +1.1
2,633,732 - +0.4
2,633,755 - +0.2
2,633,758 - +0.0
2,633,775 - -0.0
2,633,829 - Dsui_2484 0.11 +0.3
2,634,129 + Dsui_2484 0.48 +2.0
2,634,142 + Dsui_2484 0.50 +0.1
2,634,379 - Dsui_2484 0.79 +0.2
2,634,404 + Dsui_2484 0.83 +1.3
2,634,515 + +0.3
2,634,537 + +0.1
2,634,611 + +0.2
2,634,656 - Dsui_2485 0.22 -0.0
2,634,659 + Dsui_2485 0.22 +1.5
2,634,708 + Dsui_2485 0.36 -0.1

Or see this region's nucleotide sequence