Strain Fitness in Dechlorosoma suillum PS around Dsui_2402

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2401 and Dsui_2402 are separated by 299 nucleotidesDsui_2402 and Dsui_2403 are separated by 380 nucleotides Dsui_2401: Dsui_2401 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,553,861 to 2,554,595 _2401 Dsui_2402: Dsui_2402 - hypothetical protein, at 2,554,895 to 2,555,281 _2402 Dsui_2403: Dsui_2403 - universal bacterial protein YeaZ, at 2,555,662 to 2,556,345 _2403 Position (kb) 2554 2555 2556Strain fitness (log2 ratio) -1 0 1 2at 2554.000 kb on - strand, within Dsui_2401at 2554.029 kb on + strandat 2554.075 kb on + strandat 2554.162 kb on - strand, within Dsui_2401at 2554.259 kb on - strand, within Dsui_2401at 2554.284 kb on - strand, within Dsui_2401at 2554.485 kb on - strand, within Dsui_2401at 2554.680 kb on + strandat 2554.719 kb on - strandat 2554.855 kb on + strandat 2554.898 kb on + strandat 2555.216 kb on + strand, within Dsui_2402at 2555.364 kb on + strandat 2555.372 kb on + strandat 2555.413 kb on - strandat 2555.413 kb on - strandat 2555.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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2,554,000 - Dsui_2401 0.19 +0.5
2,554,029 + +1.1
2,554,075 + +1.1
2,554,162 - Dsui_2401 0.41 +0.3
2,554,259 - Dsui_2401 0.54 -0.1
2,554,284 - Dsui_2401 0.58 +0.9
2,554,485 - Dsui_2401 0.85 +1.4
2,554,680 + +1.1
2,554,719 - +2.1
2,554,855 + +0.9
2,554,898 + +0.5
2,555,216 + Dsui_2402 0.83 -1.7
2,555,364 + +1.1
2,555,372 + +2.1
2,555,413 - +1.1
2,555,413 - +1.1
2,555,625 - +0.1

Or see this region's nucleotide sequence