Strain Fitness in Dechlorosoma suillum PS around Dsui_1517

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1515 and Dsui_1516 are separated by 70 nucleotidesDsui_1516 and Dsui_1517 are separated by 19 nucleotidesDsui_1517 and Dsui_1518 are separated by 4 nucleotides Dsui_1515: Dsui_1515 - poly(A) polymerase, at 1,578,033 to 1,579,418 _1515 Dsui_1516: Dsui_1516 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 1,579,489 to 1,580,151 _1516 Dsui_1517: Dsui_1517 - DnaA regulatory inactivator Hda, at 1,580,171 to 1,580,854 _1517 Dsui_1518: Dsui_1518 - putative permease, at 1,580,859 to 1,581,980 _1518 Position (kb) 1580 1581Strain fitness (log2 ratio) -1 0 1at 1580.176 kb on - strandat 1580.924 kb on - strandat 1581.051 kb on - strand, within Dsui_1518at 1581.150 kb on + strand, within Dsui_1518at 1581.202 kb on - strand, within Dsui_1518at 1581.204 kb on - strand, within Dsui_1518at 1581.245 kb on + strand, within Dsui_1518at 1581.245 kb on + strand, within Dsui_1518at 1581.253 kb on - strand, within Dsui_1518at 1581.259 kb on - strand, within Dsui_1518at 1581.341 kb on + strand, within Dsui_1518at 1581.394 kb on - strand, within Dsui_1518at 1581.464 kb on + strandat 1581.632 kb on - strand, within Dsui_1518

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,580,176 - -0.4
1,580,924 - +0.1
1,581,051 - Dsui_1518 0.17 +0.5
1,581,150 + Dsui_1518 0.26 -0.5
1,581,202 - Dsui_1518 0.31 -0.3
1,581,204 - Dsui_1518 0.31 +0.4
1,581,245 + Dsui_1518 0.34 -1.3
1,581,245 + Dsui_1518 0.34 -1.3
1,581,253 - Dsui_1518 0.35 +0.1
1,581,259 - Dsui_1518 0.36 +0.8
1,581,341 + Dsui_1518 0.43 +0.4
1,581,394 - Dsui_1518 0.48 -0.8
1,581,464 + -0.3
1,581,632 - Dsui_1518 0.69 +0.1

Or see this region's nucleotide sequence