Strain Fitness in Dechlorosoma suillum PS around Dsui_1513

Experiment: defined media with 30 mM sodium lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1512 and Dsui_1513 are separated by 163 nucleotidesDsui_1513 and Dsui_1514 overlap by 4 nucleotidesDsui_1514 and Dsui_1515 are separated by 15 nucleotides Dsui_1512: Dsui_1512 - Na+/H+ antiporter NhaD-like permease, at 1,576,011 to 1,577,246 _1512 Dsui_1513: Dsui_1513 - hypothetical protein, at 1,577,410 to 1,577,547 _1513 Dsui_1514: Dsui_1514 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 1,577,544 to 1,578,017 _1514 Dsui_1515: Dsui_1515 - poly(A) polymerase, at 1,578,033 to 1,579,418 _1515 Position (kb) 1577 1578Strain fitness (log2 ratio) -2 -1 0 1 2at 1576.415 kb on - strand, within Dsui_1512at 1576.424 kb on + strand, within Dsui_1512at 1576.432 kb on - strand, within Dsui_1512at 1576.437 kb on + strand, within Dsui_1512at 1576.437 kb on + strand, within Dsui_1512at 1576.438 kb on - strand, within Dsui_1512at 1576.475 kb on + strand, within Dsui_1512at 1576.475 kb on - strand, within Dsui_1512at 1576.508 kb on + strand, within Dsui_1512at 1576.516 kb on - strand, within Dsui_1512at 1576.516 kb on - strandat 1576.516 kb on - strand, within Dsui_1512at 1576.557 kb on + strand, within Dsui_1512at 1576.558 kb on - strand, within Dsui_1512at 1576.649 kb on - strand, within Dsui_1512at 1576.664 kb on + strand, within Dsui_1512at 1576.688 kb on + strand, within Dsui_1512at 1576.694 kb on + strand, within Dsui_1512at 1576.695 kb on + strand, within Dsui_1512at 1576.696 kb on - strand, within Dsui_1512at 1576.702 kb on - strand, within Dsui_1512at 1576.709 kb on + strand, within Dsui_1512at 1576.709 kb on - strand, within Dsui_1512at 1576.739 kb on + strand, within Dsui_1512at 1576.752 kb on + strandat 1576.760 kb on - strand, within Dsui_1512at 1576.831 kb on + strand, within Dsui_1512at 1576.831 kb on + strand, within Dsui_1512at 1576.841 kb on + strand, within Dsui_1512at 1576.917 kb on + strand, within Dsui_1512at 1576.922 kb on - strand, within Dsui_1512at 1576.954 kb on + strand, within Dsui_1512at 1576.959 kb on + strand, within Dsui_1512at 1576.963 kb on + strand, within Dsui_1512at 1577.005 kb on + strandat 1577.013 kb on - strand, within Dsui_1512at 1577.020 kb on - strand, within Dsui_1512at 1577.026 kb on + strand, within Dsui_1512at 1577.034 kb on - strand, within Dsui_1512at 1577.034 kb on - strand, within Dsui_1512at 1577.056 kb on - strand, within Dsui_1512at 1577.064 kb on - strand, within Dsui_1512at 1577.074 kb on - strand, within Dsui_1512at 1577.074 kb on - strand, within Dsui_1512at 1577.074 kb on - strand, within Dsui_1512at 1577.091 kb on + strandat 1577.135 kb on + strandat 1577.140 kb on + strandat 1577.150 kb on + strandat 1577.150 kb on + strandat 1577.150 kb on + strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.158 kb on - strandat 1577.263 kb on + strandat 1577.263 kb on + strandat 1577.263 kb on + strandat 1577.270 kb on + strandat 1577.270 kb on + strandat 1577.271 kb on - strandat 1577.271 kb on - strandat 1577.278 kb on - strandat 1577.305 kb on - strandat 1577.305 kb on - strandat 1577.324 kb on + strandat 1577.340 kb on - strandat 1577.342 kb on + strandat 1577.406 kb on - strandat 1577.433 kb on + strandat 1577.455 kb on - strand, within Dsui_1513at 1577.459 kb on + strand, within Dsui_1513at 1577.465 kb on - strand, within Dsui_1513at 1577.474 kb on - strand, within Dsui_1513at 1577.492 kb on - strand, within Dsui_1513at 1577.502 kb on + strand, within Dsui_1513at 1577.534 kb on + strandat 1578.136 kb on + strandat 1578.268 kb on + strand, within Dsui_1515

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 30 mM sodium lactate
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1,576,415 - Dsui_1512 0.33 -0.4
1,576,424 + Dsui_1512 0.33 +1.3
1,576,432 - Dsui_1512 0.34 +0.0
1,576,437 + Dsui_1512 0.34 -0.1
1,576,437 + Dsui_1512 0.34 -0.3
1,576,438 - Dsui_1512 0.35 +0.9
1,576,475 + Dsui_1512 0.38 -0.4
1,576,475 - Dsui_1512 0.38 +0.2
1,576,508 + Dsui_1512 0.40 +0.3
1,576,516 - Dsui_1512 0.41 +0.1
1,576,516 - +1.5
1,576,516 - Dsui_1512 0.41 +0.1
1,576,557 + Dsui_1512 0.44 +0.7
1,576,558 - Dsui_1512 0.44 +0.2
1,576,649 - Dsui_1512 0.52 -0.4
1,576,664 + Dsui_1512 0.53 -0.4
1,576,688 + Dsui_1512 0.55 -0.7
1,576,694 + Dsui_1512 0.55 -0.7
1,576,695 + Dsui_1512 0.55 +0.5
1,576,696 - Dsui_1512 0.55 -0.3
1,576,702 - Dsui_1512 0.56 -1.0
1,576,709 + Dsui_1512 0.56 -0.2
1,576,709 - Dsui_1512 0.56 -0.1
1,576,739 + Dsui_1512 0.59 +0.9
1,576,752 + +0.5
1,576,760 - Dsui_1512 0.61 -0.5
1,576,831 + Dsui_1512 0.66 -1.0
1,576,831 + Dsui_1512 0.66 -1.6
1,576,841 + Dsui_1512 0.67 +0.5
1,576,917 + Dsui_1512 0.73 -0.2
1,576,922 - Dsui_1512 0.74 -0.3
1,576,954 + Dsui_1512 0.76 -1.0
1,576,959 + Dsui_1512 0.77 -1.7
1,576,963 + Dsui_1512 0.77 -0.3
1,577,005 + +1.5
1,577,013 - Dsui_1512 0.81 +0.2
1,577,020 - Dsui_1512 0.82 +0.2
1,577,026 + Dsui_1512 0.82 +0.2
1,577,034 - Dsui_1512 0.83 +0.5
1,577,034 - Dsui_1512 0.83 +0.3
1,577,056 - Dsui_1512 0.85 -0.2
1,577,064 - Dsui_1512 0.85 -0.4
1,577,074 - Dsui_1512 0.86 +0.4
1,577,074 - Dsui_1512 0.86 -0.0
1,577,074 - Dsui_1512 0.86 -0.1
1,577,091 + +1.3
1,577,135 + -0.9
1,577,140 + +0.8
1,577,150 + -0.2
1,577,150 + -1.0
1,577,150 + -0.4
1,577,158 - -1.0
1,577,158 - -0.4
1,577,158 - +1.6
1,577,158 - +0.1
1,577,158 - -0.3
1,577,158 - -0.4
1,577,263 + +1.1
1,577,263 + +0.4
1,577,263 + +0.3
1,577,270 + -0.3
1,577,270 + +0.4
1,577,271 - +0.0
1,577,271 - +0.4
1,577,278 - -0.3
1,577,305 - +0.3
1,577,305 - +0.4
1,577,324 + -0.3
1,577,340 - -0.7
1,577,342 + +0.9
1,577,406 - -0.1
1,577,433 + +2.0
1,577,455 - Dsui_1513 0.33 -0.0
1,577,459 + Dsui_1513 0.36 -0.7
1,577,465 - Dsui_1513 0.40 -0.2
1,577,474 - Dsui_1513 0.46 -0.1
1,577,492 - Dsui_1513 0.59 +0.3
1,577,502 + Dsui_1513 0.67 -0.1
1,577,534 + +0.3
1,578,136 + -1.8
1,578,268 + Dsui_1515 0.17 -1.1

Or see this region's nucleotide sequence