Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2637
Experiment: MoYLS4 with G418 0.031 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with G418 0.031 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,332,706 | - | -0.4 | |||
3,332,924 | + | +0.3 | |||
3,333,235 | + | -0.4 | |||
3,333,255 | - | -0.2 | |||
3,333,304 | + | +0.1 | |||
3,333,354 | + | -0.4 | |||
3,333,362 | - | -0.4 | |||
3,333,504 | - | +0.1 | |||
3,333,831 | - | -0.2 | |||
3,333,898 | + | DvMF_2637 | 0.14 | +0.9 | |
3,334,211 | + | DvMF_2637 | 0.36 | -0.3 | |
3,334,230 | + | DvMF_2637 | 0.37 | -0.4 | |
3,334,238 | - | DvMF_2637 | 0.38 | +0.2 | |
3,334,450 | + | DvMF_2637 | 0.53 | -0.1 | |
3,334,458 | - | DvMF_2637 | 0.53 | +0.8 | |
3,334,633 | + | DvMF_2637 | 0.65 | +0.5 | |
3,334,641 | - | DvMF_2637 | 0.66 | -0.4 | |
3,334,980 | + | DvMF_2637 | 0.90 | -0.5 | |
3,334,980 | + | DvMF_2637 | 0.90 | -0.2 | |
3,334,997 | + | -0.5 | |||
3,335,061 | - | +0.0 | |||
3,335,074 | + | -0.8 | |||
3,335,082 | - | -0.7 | |||
3,335,082 | - | +0.1 | |||
3,335,082 | - | -0.1 | |||
3,335,082 | - | -0.4 | |||
3,335,305 | + | DvMF_2638 | 0.10 | -0.2 | |
3,335,464 | + | DvMF_2638 | 0.21 | -0.2 | |
3,335,464 | + | DvMF_2638 | 0.21 | -0.5 | |
3,335,725 | + | DvMF_2638 | 0.39 | -0.6 | |
3,335,751 | + | DvMF_2638 | 0.41 | -0.4 | |
3,335,818 | - | DvMF_2638 | 0.46 | -0.1 | |
3,335,956 | + | DvMF_2638 | 0.55 | -0.6 |
Or see this region's nucleotide sequence