Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1502

Experiment: MoYLS4 with G418 0.031 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1501 and DvMF_1502 are separated by 242 nucleotidesDvMF_1502 and DvMF_1503 overlap by 4 nucleotidesDvMF_1503 and DvMF_1504 are separated by 1 nucleotides DvMF_1501: DvMF_1501 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,852,305 to 1,854,350 _1501 DvMF_1502: DvMF_1502 - protein of unknown function DUF330 (RefSeq), at 1,854,593 to 1,855,336 _1502 DvMF_1503: DvMF_1503 - Mammalian cell entry related domain protein (RefSeq), at 1,855,333 to 1,856,256 _1503 DvMF_1504: DvMF_1504 - ABC transporter related (RefSeq), at 1,856,258 to 1,857,109 _1504 Position (kb) 1854 1855 1856Strain fitness (log2 ratio) -2 -1 0 1at 1853.633 kb on + strand, within DvMF_1501at 1853.755 kb on + strand, within DvMF_1501at 1854.175 kb on - strandat 1854.270 kb on - strandat 1854.279 kb on + strandat 1854.307 kb on - strandat 1854.448 kb on - strandat 1854.552 kb on + strandat 1854.552 kb on + strandat 1854.736 kb on - strand, within DvMF_1502at 1854.758 kb on - strand, within DvMF_1502at 1854.803 kb on + strand, within DvMF_1502at 1855.164 kb on + strand, within DvMF_1502at 1855.614 kb on - strand, within DvMF_1503at 1855.678 kb on - strand, within DvMF_1503at 1855.901 kb on - strand, within DvMF_1503at 1855.972 kb on - strand, within DvMF_1503at 1856.067 kb on + strand, within DvMF_1503at 1856.067 kb on + strand, within DvMF_1503at 1856.317 kb on + strandat 1856.325 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.031 mg/ml
remove
1,853,633 + DvMF_1501 0.65 -0.4
1,853,755 + DvMF_1501 0.71 -0.5
1,854,175 - -0.2
1,854,270 - -0.8
1,854,279 + -0.7
1,854,307 - +0.5
1,854,448 - +0.1
1,854,552 + -0.2
1,854,552 + -0.4
1,854,736 - DvMF_1502 0.19 -0.9
1,854,758 - DvMF_1502 0.22 -0.2
1,854,803 + DvMF_1502 0.28 -0.4
1,855,164 + DvMF_1502 0.77 -0.1
1,855,614 - DvMF_1503 0.30 -0.7
1,855,678 - DvMF_1503 0.37 -0.3
1,855,901 - DvMF_1503 0.61 -2.2
1,855,972 - DvMF_1503 0.69 -0.5
1,856,067 + DvMF_1503 0.79 -0.6
1,856,067 + DvMF_1503 0.79 -0.6
1,856,317 + +0.1
1,856,325 - -0.4

Or see this region's nucleotide sequence