Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3838 and Shewana3_3839 are separated by 127 nucleotides Shewana3_3839 and Shewana3_3840 are separated by 55 nucleotides Shewana3_3840 and Shewana3_3841 overlap by 13 nucleotides
Shewana3_3838: Shewana3_3838 - DSBA oxidoreductase (RefSeq), at 4,609,339 to 4,609,950
_3838
Shewana3_3839: Shewana3_3839 - serine/threonine protein kinase (RefSeq), at 4,610,078 to 4,611,070
_3839
Shewana3_3840: Shewana3_3840 - hypothetical protein (RefSeq), at 4,611,126 to 4,611,443
_3840
Shewana3_3841: Shewana3_3841 - hypothetical protein (RefSeq), at 4,611,431 to 4,612,885
_3841
Position (kb) 4610
4611
4612 Strain fitness (log2 ratio) -1
0
1
2 at 4609.111 kb on - strand at 4609.284 kb on + strand at 4609.453 kb on - strand, within Shewana3_3838 at 4609.537 kb on - strand, within Shewana3_3838 at 4609.850 kb on + strand, within Shewana3_3838 at 4609.890 kb on - strand at 4610.049 kb on - strand at 4610.051 kb on - strand at 4610.068 kb on + strand at 4610.208 kb on - strand, within Shewana3_3839 at 4610.234 kb on - strand, within Shewana3_3839 at 4610.499 kb on + strand, within Shewana3_3839 at 4610.584 kb on + strand, within Shewana3_3839 at 4610.584 kb on + strand, within Shewana3_3839 at 4610.592 kb on - strand, within Shewana3_3839 at 4610.707 kb on + strand, within Shewana3_3839 at 4610.707 kb on + strand, within Shewana3_3839 at 4610.712 kb on + strand, within Shewana3_3839 at 4610.769 kb on - strand, within Shewana3_3839 at 4610.860 kb on - strand, within Shewana3_3839 at 4610.862 kb on + strand, within Shewana3_3839 at 4610.995 kb on + strand at 4611.130 kb on + strand at 4611.280 kb on + strand, within Shewana3_3840 at 4611.326 kb on - strand, within Shewana3_3840 at 4611.326 kb on - strand, within Shewana3_3840 at 4611.386 kb on - strand, within Shewana3_3840 at 4611.471 kb on + strand at 4611.510 kb on + strand at 4611.521 kb on + strand at 4611.529 kb on - strand at 4611.563 kb on - strand at 4611.677 kb on + strand, within Shewana3_3841 at 4611.709 kb on + strand, within Shewana3_3841 at 4611.717 kb on - strand, within Shewana3_3841 at 4611.766 kb on + strand, within Shewana3_3841 at 4611.838 kb on + strand, within Shewana3_3841 at 4611.838 kb on + strand, within Shewana3_3841 at 4611.846 kb on - strand, within Shewana3_3841 at 4611.846 kb on - strand, within Shewana3_3841 at 4611.913 kb on - strand, within Shewana3_3841 at 4612.013 kb on - strand, within Shewana3_3841 at 4612.021 kb on + strand, within Shewana3_3841 at 4612.021 kb on + strand, within Shewana3_3841 at 4612.029 kb on - strand, within Shewana3_3841 at 4612.057 kb on + strand, within Shewana3_3841
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,609,111 - -0.2 4,609,284 + -0.1 4,609,453 - Shewana3_3838 0.19 -1.3 4,609,537 - Shewana3_3838 0.32 +2.0 4,609,850 + Shewana3_3838 0.83 -0.2 4,609,890 - -1.4 4,610,049 - +0.4 4,610,051 - -1.2 4,610,068 + -1.4 4,610,208 - Shewana3_3839 0.13 +0.5 4,610,234 - Shewana3_3839 0.16 +0.1 4,610,499 + Shewana3_3839 0.42 -1.2 4,610,584 + Shewana3_3839 0.51 +0.3 4,610,584 + Shewana3_3839 0.51 +0.4 4,610,592 - Shewana3_3839 0.52 +0.2 4,610,707 + Shewana3_3839 0.63 +0.9 4,610,707 + Shewana3_3839 0.63 -1.2 4,610,712 + Shewana3_3839 0.64 +0.7 4,610,769 - Shewana3_3839 0.70 -0.1 4,610,860 - Shewana3_3839 0.79 +0.3 4,610,862 + Shewana3_3839 0.79 +0.5 4,610,995 + -0.1 4,611,130 + -0.9 4,611,280 + Shewana3_3840 0.48 +0.3 4,611,326 - Shewana3_3840 0.63 +0.3 4,611,326 - Shewana3_3840 0.63 -1.1 4,611,386 - Shewana3_3840 0.82 +0.1 4,611,471 + +0.6 4,611,510 + -1.2 4,611,521 + +0.6 4,611,529 - +0.2 4,611,563 - +0.3 4,611,677 + Shewana3_3841 0.17 +0.1 4,611,709 + Shewana3_3841 0.19 -1.7 4,611,717 - Shewana3_3841 0.20 -0.2 4,611,766 + Shewana3_3841 0.23 -0.1 4,611,838 + Shewana3_3841 0.28 +0.4 4,611,838 + Shewana3_3841 0.28 +0.3 4,611,846 - Shewana3_3841 0.29 +0.3 4,611,846 - Shewana3_3841 0.29 -1.6 4,611,913 - Shewana3_3841 0.33 +0.7 4,612,013 - Shewana3_3841 0.40 -0.3 4,612,021 + Shewana3_3841 0.41 -0.9 4,612,021 + Shewana3_3841 0.41 +0.6 4,612,029 - Shewana3_3841 0.41 -1.6 4,612,057 + Shewana3_3841 0.43 +0.8
Or see this region's nucleotide sequence