Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2732

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2731 and Shewana3_2732 are separated by 127 nucleotidesShewana3_2732 and Shewana3_2733 are separated by 33 nucleotides Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861 _2731 Shewana3_2732: Shewana3_2732 - phosphate ABC transporter, ATPase subunit (RefSeq), at 3,261,989 to 3,262,807 _2732 Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499 _2733 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -2 -1 0 1at 3261.878 kb on - strandat 3261.930 kb on - strandat 3261.930 kb on - strandat 3261.930 kb on - strandat 3262.169 kb on - strand, within Shewana3_2732at 3262.599 kb on - strandat 3263.093 kb on - strand, within Shewana3_2733at 3263.223 kb on - strand, within Shewana3_2733at 3263.260 kb on - strand, within Shewana3_2733at 3263.314 kb on - strand, within Shewana3_2733at 3263.314 kb on - strand, within Shewana3_2733at 3263.314 kb on - strand, within Shewana3_2733at 3263.425 kb on - strand, within Shewana3_2733at 3263.689 kb on - strand, within Shewana3_2733

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,261,878 - +0.6
3,261,930 - -0.9
3,261,930 - -0.9
3,261,930 - -0.0
3,262,169 - Shewana3_2732 0.22 -2.5
3,262,599 - -1.7
3,263,093 - Shewana3_2733 0.15 +0.2
3,263,223 - Shewana3_2733 0.23 -2.0
3,263,260 - Shewana3_2733 0.25 -0.1
3,263,314 - Shewana3_2733 0.29 +0.1
3,263,314 - Shewana3_2733 0.29 -0.7
3,263,314 - Shewana3_2733 0.29 -1.5
3,263,425 - Shewana3_2733 0.35 -0.5
3,263,689 - Shewana3_2733 0.51 -0.1

Or see this region's nucleotide sequence