Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2681 and Shewana3_2682 are separated by 232 nucleotides Shewana3_2682 and Shewana3_2683 are separated by 239 nucleotides
Shewana3_2681: Shewana3_2681 - vibriolysin (RefSeq), at 3,204,926 to 3,206,428
_2681
Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893
_2682
Shewana3_2683: Shewana3_2683 - catalase domain-containing protein (RefSeq), at 3,208,133 to 3,209,131
_2683
Position (kb)
3206
3207
3208 Strain fitness (log2 ratio)
-1
0
1 at 3205.740 kb on + strand, within Shewana3_2681 at 3205.748 kb on - strand, within Shewana3_2681 at 3205.988 kb on + strand, within Shewana3_2681 at 3206.076 kb on + strand, within Shewana3_2681 at 3206.298 kb on - strand at 3206.302 kb on + strand at 3206.310 kb on - strand at 3206.396 kb on - strand at 3206.681 kb on - strand at 3206.793 kb on + strand, within Shewana3_2682 at 3207.200 kb on - strand, within Shewana3_2682 at 3207.342 kb on - strand, within Shewana3_2682 at 3207.532 kb on + strand, within Shewana3_2682 at 3207.539 kb on - strand, within Shewana3_2682 at 3207.551 kb on + strand, within Shewana3_2682 at 3207.584 kb on + strand, within Shewana3_2682 at 3207.613 kb on - strand, within Shewana3_2682 at 3207.644 kb on + strand, within Shewana3_2682 at 3207.673 kb on - strand, within Shewana3_2682 at 3207.692 kb on + strand at 3207.780 kb on - strand at 3208.019 kb on + strand at 3208.021 kb on + strand at 3208.261 kb on - strand, within Shewana3_2683 at 3208.332 kb on - strand, within Shewana3_2683 at 3208.435 kb on + strand, within Shewana3_2683 at 3208.448 kb on - strand, within Shewana3_2683 at 3208.448 kb on - strand, within Shewana3_2683 at 3208.601 kb on + strand, within Shewana3_2683 at 3208.661 kb on - strand, within Shewana3_2683 at 3208.699 kb on - strand, within Shewana3_2683 at 3208.796 kb on - strand, within Shewana3_2683 at 3208.813 kb on + strand, within Shewana3_2683
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,205,740 + Shewana3_2681 0.54 +1.0 3,205,748 - Shewana3_2681 0.55 +0.9 3,205,988 + Shewana3_2681 0.71 +0.4 3,206,076 + Shewana3_2681 0.77 +0.4 3,206,298 - +0.8 3,206,302 + +0.6 3,206,310 - -0.3 3,206,396 - -1.1 3,206,681 - -0.6 3,206,793 + Shewana3_2682 0.11 +0.0 3,207,200 - Shewana3_2682 0.44 +0.1 3,207,342 - Shewana3_2682 0.55 +0.9 3,207,532 + Shewana3_2682 0.71 +0.1 3,207,539 - Shewana3_2682 0.71 -0.2 3,207,551 + Shewana3_2682 0.72 -0.5 3,207,584 + Shewana3_2682 0.75 +0.3 3,207,613 - Shewana3_2682 0.77 +0.4 3,207,644 + Shewana3_2682 0.80 -0.3 3,207,673 - Shewana3_2682 0.82 +0.3 3,207,692 + +0.9 3,207,780 - +0.9 3,208,019 + -0.6 3,208,021 + -0.1 3,208,261 - Shewana3_2683 0.13 +0.8 3,208,332 - Shewana3_2683 0.20 -0.6 3,208,435 + Shewana3_2683 0.30 +0.7 3,208,448 - Shewana3_2683 0.32 +0.9 3,208,448 - Shewana3_2683 0.32 -0.7 3,208,601 + Shewana3_2683 0.47 -0.3 3,208,661 - Shewana3_2683 0.53 -0.7 3,208,699 - Shewana3_2683 0.57 -0.8 3,208,796 - Shewana3_2683 0.66 +0.5 3,208,813 + Shewana3_2683 0.68 -1.2
Or see this region's nucleotide sequence