Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2682

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2681 and Shewana3_2682 are separated by 232 nucleotidesShewana3_2682 and Shewana3_2683 are separated by 239 nucleotides Shewana3_2681: Shewana3_2681 - vibriolysin (RefSeq), at 3,204,926 to 3,206,428 _2681 Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893 _2682 Shewana3_2683: Shewana3_2683 - catalase domain-containing protein (RefSeq), at 3,208,133 to 3,209,131 _2683 Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -1 0 1at 3205.740 kb on + strand, within Shewana3_2681at 3205.748 kb on - strand, within Shewana3_2681at 3205.988 kb on + strand, within Shewana3_2681at 3206.076 kb on + strand, within Shewana3_2681at 3206.298 kb on - strandat 3206.302 kb on + strandat 3206.310 kb on - strandat 3206.396 kb on - strandat 3206.681 kb on - strandat 3206.793 kb on + strand, within Shewana3_2682at 3207.200 kb on - strand, within Shewana3_2682at 3207.342 kb on - strand, within Shewana3_2682at 3207.532 kb on + strand, within Shewana3_2682at 3207.539 kb on - strand, within Shewana3_2682at 3207.551 kb on + strand, within Shewana3_2682at 3207.584 kb on + strand, within Shewana3_2682at 3207.613 kb on - strand, within Shewana3_2682at 3207.644 kb on + strand, within Shewana3_2682at 3207.673 kb on - strand, within Shewana3_2682at 3207.692 kb on + strandat 3207.780 kb on - strandat 3208.019 kb on + strandat 3208.021 kb on + strandat 3208.261 kb on - strand, within Shewana3_2683at 3208.332 kb on - strand, within Shewana3_2683at 3208.435 kb on + strand, within Shewana3_2683at 3208.448 kb on - strand, within Shewana3_2683at 3208.448 kb on - strand, within Shewana3_2683at 3208.601 kb on + strand, within Shewana3_2683at 3208.661 kb on - strand, within Shewana3_2683at 3208.699 kb on - strand, within Shewana3_2683at 3208.796 kb on - strand, within Shewana3_2683at 3208.813 kb on + strand, within Shewana3_2683

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,205,740 + Shewana3_2681 0.54 +1.0
3,205,748 - Shewana3_2681 0.55 +0.9
3,205,988 + Shewana3_2681 0.71 +0.4
3,206,076 + Shewana3_2681 0.77 +0.4
3,206,298 - +0.8
3,206,302 + +0.6
3,206,310 - -0.3
3,206,396 - -1.1
3,206,681 - -0.6
3,206,793 + Shewana3_2682 0.11 +0.0
3,207,200 - Shewana3_2682 0.44 +0.1
3,207,342 - Shewana3_2682 0.55 +0.9
3,207,532 + Shewana3_2682 0.71 +0.1
3,207,539 - Shewana3_2682 0.71 -0.2
3,207,551 + Shewana3_2682 0.72 -0.5
3,207,584 + Shewana3_2682 0.75 +0.3
3,207,613 - Shewana3_2682 0.77 +0.4
3,207,644 + Shewana3_2682 0.80 -0.3
3,207,673 - Shewana3_2682 0.82 +0.3
3,207,692 + +0.9
3,207,780 - +0.9
3,208,019 + -0.6
3,208,021 + -0.1
3,208,261 - Shewana3_2683 0.13 +0.8
3,208,332 - Shewana3_2683 0.20 -0.6
3,208,435 + Shewana3_2683 0.30 +0.7
3,208,448 - Shewana3_2683 0.32 +0.9
3,208,448 - Shewana3_2683 0.32 -0.7
3,208,601 + Shewana3_2683 0.47 -0.3
3,208,661 - Shewana3_2683 0.53 -0.7
3,208,699 - Shewana3_2683 0.57 -0.8
3,208,796 - Shewana3_2683 0.66 +0.5
3,208,813 + Shewana3_2683 0.68 -1.2

Or see this region's nucleotide sequence