Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1913

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1912 and Shewana3_1913 overlap by 4 nucleotidesShewana3_1913 and Shewana3_1914 are separated by 448 nucleotides Shewana3_1912: Shewana3_1912 - succinyl-diaminopimelate desuccinylase (RefSeq), at 2,268,700 to 2,269,845 _1912 Shewana3_1913: Shewana3_1913 - arsenate reductase and related (RefSeq), at 2,269,842 to 2,270,246 _1913 Shewana3_1914: Shewana3_1914 - TonB-dependent receptor (RefSeq), at 2,270,695 to 2,273,367 _1914 Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -1 0 1at 2270.377 kb on - strandat 2270.397 kb on - strandat 2270.397 kb on - strandat 2270.402 kb on + strandat 2270.496 kb on + strandat 2270.551 kb on + strandat 2270.574 kb on - strandat 2270.574 kb on - strandat 2270.671 kb on + strandat 2270.674 kb on - strandat 2270.987 kb on - strand, within Shewana3_1914at 2271.036 kb on + strand, within Shewana3_1914at 2271.068 kb on - strand, within Shewana3_1914at 2271.112 kb on + strand, within Shewana3_1914at 2271.116 kb on + strand, within Shewana3_1914at 2271.124 kb on - strand, within Shewana3_1914

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
2,270,377 - -1.4
2,270,397 - -0.3
2,270,397 - -1.0
2,270,402 + -0.1
2,270,496 + +0.2
2,270,551 + +0.2
2,270,574 - +0.8
2,270,574 - +0.5
2,270,671 + -1.4
2,270,674 - +0.6
2,270,987 - Shewana3_1914 0.11 +0.2
2,271,036 + Shewana3_1914 0.13 +0.4
2,271,068 - Shewana3_1914 0.14 +1.2
2,271,112 + Shewana3_1914 0.16 +0.8
2,271,116 + Shewana3_1914 0.16 -0.5
2,271,124 - Shewana3_1914 0.16 -0.1

Or see this region's nucleotide sequence