Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1735

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1734 and Shewana3_1735 are separated by 181 nucleotidesShewana3_1735 and Shewana3_1736 are separated by 124 nucleotides Shewana3_1734: Shewana3_1734 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 2,042,126 to 2,043,190 _1734 Shewana3_1735: Shewana3_1735 - hypothetical protein (RefSeq), at 2,043,372 to 2,044,184 _1735 Shewana3_1736: Shewana3_1736 - phosphoenolpyruvate synthase (RefSeq), at 2,044,309 to 2,046,678 _1736 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2042.421 kb on - strand, within Shewana3_1734at 2042.651 kb on + strand, within Shewana3_1734at 2042.691 kb on - strand, within Shewana3_1734at 2042.710 kb on + strand, within Shewana3_1734at 2042.951 kb on + strand, within Shewana3_1734at 2042.978 kb on + strand, within Shewana3_1734at 2043.032 kb on + strand, within Shewana3_1734at 2043.120 kb on + strandat 2043.143 kb on - strandat 2043.254 kb on + strandat 2043.256 kb on + strandat 2043.256 kb on + strandat 2043.264 kb on - strandat 2043.264 kb on - strandat 2043.363 kb on - strandat 2043.438 kb on - strandat 2043.512 kb on + strand, within Shewana3_1735at 2043.512 kb on + strand, within Shewana3_1735at 2044.243 kb on - strandat 2044.450 kb on + strandat 2044.563 kb on + strand, within Shewana3_1736at 2044.600 kb on + strand, within Shewana3_1736at 2044.600 kb on + strand, within Shewana3_1736at 2044.600 kb on + strand, within Shewana3_1736at 2044.832 kb on + strand, within Shewana3_1736at 2044.847 kb on + strand, within Shewana3_1736at 2044.855 kb on - strand, within Shewana3_1736at 2044.933 kb on + strand, within Shewana3_1736at 2045.094 kb on + strand, within Shewana3_1736

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,042,421 - Shewana3_1734 0.28 +0.0
2,042,651 + Shewana3_1734 0.49 -1.1
2,042,691 - Shewana3_1734 0.53 -0.0
2,042,710 + Shewana3_1734 0.55 +0.5
2,042,951 + Shewana3_1734 0.77 +0.3
2,042,978 + Shewana3_1734 0.80 +0.6
2,043,032 + Shewana3_1734 0.85 +1.6
2,043,120 + -1.5
2,043,143 - +0.9
2,043,254 + +0.4
2,043,256 + +0.0
2,043,256 + -0.1
2,043,264 - +0.4
2,043,264 - +0.3
2,043,363 - +0.2
2,043,438 - -0.5
2,043,512 + Shewana3_1735 0.17 -0.5
2,043,512 + Shewana3_1735 0.17 -1.6
2,044,243 - -5.1
2,044,450 + -4.9
2,044,563 + Shewana3_1736 0.11 -2.8
2,044,600 + Shewana3_1736 0.12 -6.7
2,044,600 + Shewana3_1736 0.12 -3.4
2,044,600 + Shewana3_1736 0.12 -4.2
2,044,832 + Shewana3_1736 0.22 -3.9
2,044,847 + Shewana3_1736 0.23 -1.4
2,044,855 - Shewana3_1736 0.23 -3.3
2,044,933 + Shewana3_1736 0.26 -5.3
2,045,094 + Shewana3_1736 0.33 -3.6

Or see this region's nucleotide sequence