Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1132

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalS and Shewana3_1132 are separated by 15 nucleotides Shewana3_1131: valS - valyl-tRNA synthetase (RefSeq), at 1,334,038 to 1,336,914 valS Shewana3_1132: Shewana3_1132 - DNA polymerase III chi subunit, HolC (RefSeq), at 1,336,930 to 1,337,394 _1132 Position (kb) 1336 1337 1338Strain fitness (log2 ratio) -2 -1 0 1at 1337.372 kb on + strandat 1337.380 kb on - strandat 1337.409 kb on + strandat 1337.520 kb on - strandat 1337.528 kb on + strandat 1337.537 kb on - strandat 1337.564 kb on - strandat 1337.601 kb on + strandat 1337.630 kb on - strandat 1337.632 kb on + strandat 1337.855 kb on + strandat 1337.952 kb on - strandat 1338.065 kb on + strandat 1338.121 kb on + strandat 1338.205 kb on + strandat 1338.265 kb on - strandat 1338.321 kb on - strandat 1338.321 kb on - strandat 1338.321 kb on - strandat 1338.339 kb on + strandat 1338.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,337,372 + +0.7
1,337,380 - +1.0
1,337,409 + -0.0
1,337,520 - +0.5
1,337,528 + +0.2
1,337,537 - -2.2
1,337,564 - +0.5
1,337,601 + +0.2
1,337,630 - -0.0
1,337,632 + +0.5
1,337,855 + -1.7
1,337,952 - +0.7
1,338,065 + +0.7
1,338,121 + +0.5
1,338,205 + -0.2
1,338,265 - +0.5
1,338,321 - +1.0
1,338,321 - +0.7
1,338,321 - +0.4
1,338,339 + -0.9
1,338,373 - -1.3

Or see this region's nucleotide sequence