Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0831 and Shewana3_0832 are separated by 257 nucleotides Shewana3_0832 and Shewana3_0833 are separated by 102 nucleotides
Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621
_0831
Shewana3_0832: Shewana3_0832 - glutamate-ammonia ligase adenylyltransferase (RefSeq), at 962,879 to 965,743
_0832
Shewana3_0833: Shewana3_0833 - diguanylate cyclase with GAF sensor (RefSeq), at 965,846 to 966,814
_0833
Position (kb) 962
963
964
965
966 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 962.346 kb on + strand, within Shewana3_0831 at 962.369 kb on - strand, within Shewana3_0831 at 962.427 kb on + strand, within Shewana3_0831 at 962.439 kb on - strand, within Shewana3_0831 at 962.449 kb on + strand, within Shewana3_0831 at 962.467 kb on + strand, within Shewana3_0831 at 962.509 kb on - strand, within Shewana3_0831 at 962.539 kb on - strand at 962.702 kb on + strand at 962.710 kb on - strand at 962.803 kb on + strand at 962.906 kb on - strand at 962.941 kb on + strand at 962.975 kb on - strand at 963.081 kb on - strand at 963.081 kb on - strand at 963.153 kb on - strand at 963.239 kb on + strand, within Shewana3_0832 at 963.247 kb on - strand, within Shewana3_0832 at 963.249 kb on + strand, within Shewana3_0832 at 963.263 kb on + strand, within Shewana3_0832 at 963.263 kb on + strand, within Shewana3_0832 at 963.279 kb on - strand, within Shewana3_0832 at 963.303 kb on + strand, within Shewana3_0832 at 963.456 kb on + strand, within Shewana3_0832 at 963.833 kb on - strand, within Shewana3_0832 at 963.833 kb on - strand, within Shewana3_0832 at 963.833 kb on - strand, within Shewana3_0832 at 963.938 kb on - strand, within Shewana3_0832 at 963.995 kb on - strand, within Shewana3_0832 at 963.995 kb on - strand, within Shewana3_0832 at 963.995 kb on - strand, within Shewana3_0832 at 964.136 kb on + strand, within Shewana3_0832 at 964.136 kb on + strand, within Shewana3_0832 at 964.136 kb on + strand, within Shewana3_0832 at 964.144 kb on - strand, within Shewana3_0832 at 964.144 kb on - strand, within Shewana3_0832 at 964.178 kb on - strand, within Shewana3_0832 at 964.218 kb on + strand, within Shewana3_0832 at 964.240 kb on + strand, within Shewana3_0832 at 964.260 kb on - strand, within Shewana3_0832 at 964.275 kb on - strand, within Shewana3_0832 at 964.447 kb on - strand, within Shewana3_0832 at 964.559 kb on - strand, within Shewana3_0832 at 964.561 kb on + strand, within Shewana3_0832 at 964.581 kb on - strand, within Shewana3_0832 at 964.723 kb on + strand, within Shewana3_0832 at 964.815 kb on + strand, within Shewana3_0832 at 964.832 kb on + strand, within Shewana3_0832 at 964.953 kb on - strand, within Shewana3_0832 at 965.119 kb on - strand, within Shewana3_0832 at 965.159 kb on + strand, within Shewana3_0832 at 965.242 kb on + strand, within Shewana3_0832 at 965.242 kb on + strand, within Shewana3_0832 at 965.323 kb on + strand, within Shewana3_0832 at 965.517 kb on + strand at 965.525 kb on - strand at 965.590 kb on + strand at 965.610 kb on - strand at 966.018 kb on + strand, within Shewana3_0833 at 966.490 kb on + strand, within Shewana3_0833 at 966.490 kb on + strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.558 kb on - strand, within Shewana3_0833 at 966.625 kb on - strand, within Shewana3_0833
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 962,346 + Shewana3_0831 0.72 -1.0 962,369 - Shewana3_0831 0.74 -0.3 962,427 + Shewana3_0831 0.80 +0.2 962,439 - Shewana3_0831 0.81 -2.3 962,449 + Shewana3_0831 0.82 -0.0 962,467 + Shewana3_0831 0.84 -0.2 962,509 - Shewana3_0831 0.88 +0.1 962,539 - -0.4 962,702 + -3.2 962,710 - +0.3 962,803 + -1.4 962,906 - -0.9 962,941 + -0.2 962,975 - -0.8 963,081 - +0.4 963,081 - -0.7 963,153 - -0.5 963,239 + Shewana3_0832 0.13 -1.8 963,247 - Shewana3_0832 0.13 -0.2 963,249 + Shewana3_0832 0.13 +0.0 963,263 + Shewana3_0832 0.13 -0.7 963,263 + Shewana3_0832 0.13 -1.5 963,279 - Shewana3_0832 0.14 -0.2 963,303 + Shewana3_0832 0.15 -1.1 963,456 + Shewana3_0832 0.20 -1.7 963,833 - Shewana3_0832 0.33 -0.7 963,833 - Shewana3_0832 0.33 -0.2 963,833 - Shewana3_0832 0.33 -0.4 963,938 - Shewana3_0832 0.37 -0.9 963,995 - Shewana3_0832 0.39 -0.7 963,995 - Shewana3_0832 0.39 -0.4 963,995 - Shewana3_0832 0.39 -0.5 964,136 + Shewana3_0832 0.44 -5.5 964,136 + Shewana3_0832 0.44 -2.2 964,136 + Shewana3_0832 0.44 -5.8 964,144 - Shewana3_0832 0.44 -1.8 964,144 - Shewana3_0832 0.44 -0.9 964,178 - Shewana3_0832 0.45 -0.1 964,218 + Shewana3_0832 0.47 -3.2 964,240 + Shewana3_0832 0.48 -3.7 964,260 - Shewana3_0832 0.48 -0.6 964,275 - Shewana3_0832 0.49 -0.4 964,447 - Shewana3_0832 0.55 -0.6 964,559 - Shewana3_0832 0.59 -1.6 964,561 + Shewana3_0832 0.59 -3.6 964,581 - Shewana3_0832 0.59 -1.5 964,723 + Shewana3_0832 0.64 -1.0 964,815 + Shewana3_0832 0.68 -0.1 964,832 + Shewana3_0832 0.68 -0.2 964,953 - Shewana3_0832 0.72 -1.5 965,119 - Shewana3_0832 0.78 -0.7 965,159 + Shewana3_0832 0.80 -0.9 965,242 + Shewana3_0832 0.82 -1.2 965,242 + Shewana3_0832 0.82 -0.9 965,323 + Shewana3_0832 0.85 -1.1 965,517 + -0.4 965,525 - -2.5 965,590 + +0.2 965,610 - -0.8 966,018 + Shewana3_0833 0.18 +0.3 966,490 + Shewana3_0833 0.66 -1.8 966,490 + Shewana3_0833 0.66 -0.0 966,498 - Shewana3_0833 0.67 -1.3 966,498 - Shewana3_0833 0.67 -1.4 966,498 - Shewana3_0833 0.67 -0.2 966,498 - Shewana3_0833 0.67 -1.2 966,558 - Shewana3_0833 0.73 -1.1 966,625 - Shewana3_0833 0.80 -1.3
Or see this region's nucleotide sequence