Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0258

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0256 and Shewana3_0257 are separated by 186 nucleotidesShewana3_0257 and Shewana3_0258 are separated by 213 nucleotidesShewana3_0258 and Shewana3_0259 are separated by 43 nucleotides Shewana3_0256: Shewana3_0256 - hypothetical protein (RefSeq), at 287,807 to 288,217 _0256 Shewana3_0257: Shewana3_0257 - outer membrane protein, putative (RefSeq), at 288,404 to 288,817 _0257 Shewana3_0258: Shewana3_0258 - nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq), at 289,031 to 290,440 _0258 Shewana3_0259: Shewana3_0259 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 290,484 to 291,530 _0259 Position (kb) 289 290 291Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 288.055 kb on - strand, within Shewana3_0256at 288.093 kb on + strand, within Shewana3_0256at 288.101 kb on - strand, within Shewana3_0256at 288.101 kb on - strand, within Shewana3_0256at 288.102 kb on + strand, within Shewana3_0256at 288.102 kb on + strand, within Shewana3_0256at 288.110 kb on - strand, within Shewana3_0256at 288.138 kb on + strand, within Shewana3_0256at 288.157 kb on - strand, within Shewana3_0256at 288.157 kb on - strand, within Shewana3_0256at 288.384 kb on - strandat 288.389 kb on - strandat 288.460 kb on + strand, within Shewana3_0257at 288.473 kb on + strand, within Shewana3_0257at 288.518 kb on + strand, within Shewana3_0257at 288.519 kb on + strand, within Shewana3_0257at 288.526 kb on - strand, within Shewana3_0257at 288.526 kb on - strand, within Shewana3_0257at 288.528 kb on - strand, within Shewana3_0257at 288.550 kb on - strand, within Shewana3_0257at 288.562 kb on - strand, within Shewana3_0257at 288.706 kb on + strand, within Shewana3_0257at 288.818 kb on - strandat 288.835 kb on + strandat 289.090 kb on - strandat 289.124 kb on + strandat 289.124 kb on + strandat 289.132 kb on - strandat 289.132 kb on - strandat 289.137 kb on - strandat 289.211 kb on + strand, within Shewana3_0258at 289.269 kb on - strand, within Shewana3_0258at 289.286 kb on - strand, within Shewana3_0258at 289.388 kb on - strand, within Shewana3_0258at 289.388 kb on - strand, within Shewana3_0258at 289.471 kb on + strand, within Shewana3_0258at 290.074 kb on - strand, within Shewana3_0258at 290.091 kb on - strand, within Shewana3_0258at 290.131 kb on - strand, within Shewana3_0258at 290.170 kb on + strand, within Shewana3_0258at 290.188 kb on - strand, within Shewana3_0258at 290.188 kb on - strand, within Shewana3_0258at 290.188 kb on - strand, within Shewana3_0258at 290.188 kb on - strand, within Shewana3_0258at 290.199 kb on + strand, within Shewana3_0258at 290.251 kb on + strand, within Shewana3_0258at 290.251 kb on + strand, within Shewana3_0258at 290.251 kb on + strand, within Shewana3_0258at 290.251 kb on + strand, within Shewana3_0258at 290.251 kb on + strand, within Shewana3_0258at 290.259 kb on - strand, within Shewana3_0258at 290.259 kb on - strand, within Shewana3_0258at 290.297 kb on - strand, within Shewana3_0258at 290.357 kb on + strandat 290.528 kb on + strandat 290.536 kb on - strandat 290.597 kb on - strand, within Shewana3_0259at 290.626 kb on + strand, within Shewana3_0259at 290.632 kb on + strand, within Shewana3_0259at 290.640 kb on - strand, within Shewana3_0259at 290.640 kb on - strand, within Shewana3_0259at 290.640 kb on - strand, within Shewana3_0259at 290.675 kb on - strand, within Shewana3_0259at 290.694 kb on + strand, within Shewana3_0259at 290.699 kb on + strand, within Shewana3_0259at 290.707 kb on - strand, within Shewana3_0259at 290.707 kb on - strand, within Shewana3_0259at 290.707 kb on - strand, within Shewana3_0259at 290.778 kb on + strand, within Shewana3_0259at 290.785 kb on - strand, within Shewana3_0259at 290.947 kb on - strand, within Shewana3_0259at 291.083 kb on + strand, within Shewana3_0259at 291.091 kb on - strand, within Shewana3_0259at 291.236 kb on - strand, within Shewana3_0259at 291.236 kb on - strand, within Shewana3_0259at 291.324 kb on + strand, within Shewana3_0259

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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288,055 - Shewana3_0256 0.60 +0.8
288,093 + Shewana3_0256 0.70 +0.7
288,101 - Shewana3_0256 0.72 -0.5
288,101 - Shewana3_0256 0.72 +0.6
288,102 + Shewana3_0256 0.72 +0.4
288,102 + Shewana3_0256 0.72 -0.0
288,110 - Shewana3_0256 0.74 +0.4
288,138 + Shewana3_0256 0.81 -1.0
288,157 - Shewana3_0256 0.85 -1.0
288,157 - Shewana3_0256 0.85 +0.2
288,384 - +0.6
288,389 - -1.1
288,460 + Shewana3_0257 0.14 +0.4
288,473 + Shewana3_0257 0.17 -0.9
288,518 + Shewana3_0257 0.28 +0.4
288,519 + Shewana3_0257 0.28 +0.5
288,526 - Shewana3_0257 0.29 -1.3
288,526 - Shewana3_0257 0.29 +0.7
288,528 - Shewana3_0257 0.30 +0.2
288,550 - Shewana3_0257 0.35 +0.1
288,562 - Shewana3_0257 0.38 +0.7
288,706 + Shewana3_0257 0.73 +0.2
288,818 - -0.1
288,835 + -0.1
289,090 - -4.7
289,124 + -5.3
289,124 + -4.4
289,132 - -5.5
289,132 - -3.5
289,137 - -5.6
289,211 + Shewana3_0258 0.13 -5.1
289,269 - Shewana3_0258 0.17 -7.0
289,286 - Shewana3_0258 0.18 -4.7
289,388 - Shewana3_0258 0.25 -4.8
289,388 - Shewana3_0258 0.25 -5.4
289,471 + Shewana3_0258 0.31 -6.3
290,074 - Shewana3_0258 0.74 -4.8
290,091 - Shewana3_0258 0.75 -4.9
290,131 - Shewana3_0258 0.78 -4.2
290,170 + Shewana3_0258 0.81 -5.6
290,188 - Shewana3_0258 0.82 -6.9
290,188 - Shewana3_0258 0.82 -4.7
290,188 - Shewana3_0258 0.82 -5.9
290,188 - Shewana3_0258 0.82 -4.5
290,199 + Shewana3_0258 0.83 -4.3
290,251 + Shewana3_0258 0.87 -6.0
290,251 + Shewana3_0258 0.87 -6.1
290,251 + Shewana3_0258 0.87 -4.4
290,251 + Shewana3_0258 0.87 -4.1
290,251 + Shewana3_0258 0.87 -5.3
290,259 - Shewana3_0258 0.87 -2.8
290,259 - Shewana3_0258 0.87 -2.5
290,297 - Shewana3_0258 0.90 -6.1
290,357 + -5.7
290,528 + -6.1
290,536 - -4.1
290,597 - Shewana3_0259 0.11 -3.6
290,626 + Shewana3_0259 0.14 -4.4
290,632 + Shewana3_0259 0.14 -6.1
290,640 - Shewana3_0259 0.15 -5.4
290,640 - Shewana3_0259 0.15 -4.6
290,640 - Shewana3_0259 0.15 -5.9
290,675 - Shewana3_0259 0.18 -6.7
290,694 + Shewana3_0259 0.20 -4.9
290,699 + Shewana3_0259 0.21 -5.0
290,707 - Shewana3_0259 0.21 -4.2
290,707 - Shewana3_0259 0.21 -6.0
290,707 - Shewana3_0259 0.21 -2.8
290,778 + Shewana3_0259 0.28 -7.5
290,785 - Shewana3_0259 0.29 -4.6
290,947 - Shewana3_0259 0.44 -2.9
291,083 + Shewana3_0259 0.57 -7.0
291,091 - Shewana3_0259 0.58 -6.2
291,236 - Shewana3_0259 0.72 -3.5
291,236 - Shewana3_0259 0.72 -4.0
291,324 + Shewana3_0259 0.80 -5.6

Or see this region's nucleotide sequence