Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4300 and Shewana3_4301 are separated by 95 nucleotides Shewana3_4301 and Shewana3_4302 are separated by 126 nucleotides Shewana3_4302 and Shewana3_4303 are separated by 271 nucleotides
Shewana3_4300: Shewana3_4300 - CzcA family heavy metal efflux protein (RefSeq), at 183,606 to 186,752
_4300
Shewana3_4301: Shewana3_4301 - hypothetical protein (RefSeq), at 186,848 to 187,279
_4301
Shewana3_4302: Shewana3_4302 - heavy metal translocating P-type ATPase (RefSeq), at 187,406 to 189,853
_4302
Shewana3_4303: Shewana3_4303 - peptidase M23B (RefSeq), at 190,125 to 190,862
_4303
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.516 kb on - strand at 186.558 kb on + strand at 186.768 kb on + strand at 186.811 kb on - strand at 186.825 kb on + strand at 186.832 kb on + strand at 187.154 kb on + strand, within Shewana3_4301 at 187.609 kb on - strand at 187.691 kb on - strand, within Shewana3_4302 at 187.691 kb on - strand, within Shewana3_4302 at 187.763 kb on + strand, within Shewana3_4302 at 187.786 kb on + strand, within Shewana3_4302 at 187.836 kb on + strand, within Shewana3_4302 at 187.931 kb on + strand, within Shewana3_4302 at 187.967 kb on + strand, within Shewana3_4302 at 187.969 kb on + strand, within Shewana3_4302 at 188.241 kb on + strand, within Shewana3_4302 at 188.399 kb on - strand, within Shewana3_4302 at 188.517 kb on + strand, within Shewana3_4302 at 188.622 kb on + strand, within Shewana3_4302 at 189.056 kb on + strand, within Shewana3_4302 at 189.056 kb on + strand, within Shewana3_4302 at 189.064 kb on - strand, within Shewana3_4302 at 189.330 kb on - strand, within Shewana3_4302 at 189.547 kb on + strand, within Shewana3_4302 at 189.555 kb on - strand, within Shewana3_4302 at 189.604 kb on + strand, within Shewana3_4302 at 189.604 kb on + strand, within Shewana3_4302 at 189.604 kb on + strand, within Shewana3_4302 at 189.733 kb on + strand at 189.733 kb on + strand at 189.741 kb on - strand at 189.940 kb on + strand at 189.972 kb on - strand at 190.310 kb on + strand, within Shewana3_4303 at 190.323 kb on - strand, within Shewana3_4303 at 190.421 kb on - strand, within Shewana3_4303 at 190.421 kb on - strand, within Shewana3_4303 at 190.528 kb on - strand, within Shewana3_4303 at 190.765 kb on + strand, within Shewana3_4303 at 190.773 kb on - strand, within Shewana3_4303
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 186,516 - -1.1 186,558 + -1.6 186,768 + +0.4 186,811 - -2.4 186,825 + +0.2 186,832 + +0.2 187,154 + Shewana3_4301 0.71 -0.6 187,609 - +0.3 187,691 - Shewana3_4302 0.12 +1.2 187,691 - Shewana3_4302 0.12 +1.0 187,763 + Shewana3_4302 0.15 +0.3 187,786 + Shewana3_4302 0.16 +0.1 187,836 + Shewana3_4302 0.18 +0.4 187,931 + Shewana3_4302 0.21 -0.1 187,967 + Shewana3_4302 0.23 -1.0 187,969 + Shewana3_4302 0.23 +0.6 188,241 + Shewana3_4302 0.34 +0.6 188,399 - Shewana3_4302 0.41 +0.3 188,517 + Shewana3_4302 0.45 +0.4 188,622 + Shewana3_4302 0.50 -0.1 189,056 + Shewana3_4302 0.67 -0.3 189,056 + Shewana3_4302 0.67 +0.3 189,064 - Shewana3_4302 0.68 -2.5 189,330 - Shewana3_4302 0.79 +0.5 189,547 + Shewana3_4302 0.87 -0.9 189,555 - Shewana3_4302 0.88 +0.5 189,604 + Shewana3_4302 0.90 +0.2 189,604 + Shewana3_4302 0.90 +0.8 189,604 + Shewana3_4302 0.90 -0.6 189,733 + +0.4 189,733 + +0.7 189,741 - +0.4 189,940 + +0.5 189,972 - +0.0 190,310 + Shewana3_4303 0.25 -1.8 190,323 - Shewana3_4303 0.27 +1.8 190,421 - Shewana3_4303 0.40 -0.8 190,421 - Shewana3_4303 0.40 -1.1 190,528 - Shewana3_4303 0.55 -1.1 190,765 + Shewana3_4303 0.87 +0.2 190,773 - Shewana3_4303 0.88 -1.6
Or see this region's nucleotide sequence