Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4187 and Shewana3_4188 are separated by 287 nucleotides Shewana3_4188 and Shewana3_4189 are separated by 66 nucleotides Shewana3_4189 and Shewana3_4190 are separated by 91 nucleotides
Shewana3_4187: Shewana3_4187 - hypothetical protein (RefSeq), at 51,874 to 52,488
_4187
Shewana3_4188: Shewana3_4188 - hypothetical protein (RefSeq), at 52,776 to 53,429
_4188
Shewana3_4189: Shewana3_4189 - hypothetical protein (RefSeq), at 53,496 to 54,005
_4189
Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537
_4190
Position (kb) 52
53
54 Strain fitness (log2 ratio) -2
-1
0
1 at 51.855 kb on - strand at 52.172 kb on - strand, within Shewana3_4187 at 52.304 kb on - strand, within Shewana3_4187 at 52.306 kb on + strand, within Shewana3_4187 at 52.529 kb on + strand at 52.821 kb on + strand at 52.827 kb on + strand at 52.835 kb on - strand at 52.839 kb on + strand at 52.858 kb on + strand, within Shewana3_4188 at 52.891 kb on + strand, within Shewana3_4188 at 52.899 kb on - strand, within Shewana3_4188 at 52.899 kb on - strand, within Shewana3_4188 at 52.901 kb on + strand, within Shewana3_4188 at 53.020 kb on - strand, within Shewana3_4188 at 53.020 kb on - strand, within Shewana3_4188 at 53.039 kb on - strand, within Shewana3_4188 at 53.150 kb on + strand, within Shewana3_4188 at 53.158 kb on - strand, within Shewana3_4188 at 53.158 kb on - strand, within Shewana3_4188 at 53.175 kb on + strand, within Shewana3_4188 at 53.299 kb on - strand, within Shewana3_4188 at 53.494 kb on - strand at 53.502 kb on - strand at 53.504 kb on + strand at 53.601 kb on + strand, within Shewana3_4189 at 53.606 kb on - strand, within Shewana3_4189 at 53.606 kb on - strand, within Shewana3_4189 at 53.652 kb on - strand, within Shewana3_4189 at 53.812 kb on - strand, within Shewana3_4189 at 53.814 kb on + strand, within Shewana3_4189 at 53.815 kb on - strand, within Shewana3_4189 at 53.820 kb on - strand, within Shewana3_4189 at 53.822 kb on - strand, within Shewana3_4189 at 53.939 kb on - strand, within Shewana3_4189 at 53.953 kb on - strand, within Shewana3_4189 at 54.038 kb on + strand at 54.038 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.054 kb on + strand at 54.062 kb on - strand at 54.168 kb on - strand, within Shewana3_4190 at 54.189 kb on - strand, within Shewana3_4190 at 54.193 kb on - strand, within Shewana3_4190 at 54.240 kb on + strand, within Shewana3_4190 at 54.248 kb on - strand, within Shewana3_4190 at 54.267 kb on + strand, within Shewana3_4190 at 54.267 kb on + strand, within Shewana3_4190 at 54.275 kb on - strand, within Shewana3_4190 at 54.275 kb on - strand, within Shewana3_4190 at 54.282 kb on + strand, within Shewana3_4190
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 51,855 - -0.7 52,172 - Shewana3_4187 0.48 -0.2 52,304 - Shewana3_4187 0.70 -1.0 52,306 + Shewana3_4187 0.70 -1.5 52,529 + +0.6 52,821 + +0.0 52,827 + -1.3 52,835 - +0.0 52,839 + +0.6 52,858 + Shewana3_4188 0.13 -2.1 52,891 + Shewana3_4188 0.18 -0.4 52,899 - Shewana3_4188 0.19 -0.2 52,899 - Shewana3_4188 0.19 -0.2 52,901 + Shewana3_4188 0.19 +0.2 53,020 - Shewana3_4188 0.37 +0.5 53,020 - Shewana3_4188 0.37 -0.5 53,039 - Shewana3_4188 0.40 -0.7 53,150 + Shewana3_4188 0.57 -0.0 53,158 - Shewana3_4188 0.58 -1.3 53,158 - Shewana3_4188 0.58 +1.1 53,175 + Shewana3_4188 0.61 +0.7 53,299 - Shewana3_4188 0.80 -0.9 53,494 - +0.3 53,502 - -0.4 53,504 + -0.3 53,601 + Shewana3_4189 0.21 +0.3 53,606 - Shewana3_4189 0.22 -1.7 53,606 - Shewana3_4189 0.22 -1.1 53,652 - Shewana3_4189 0.31 +0.1 53,812 - Shewana3_4189 0.62 -1.1 53,814 + Shewana3_4189 0.62 +0.3 53,815 - Shewana3_4189 0.63 +0.4 53,820 - Shewana3_4189 0.64 +0.1 53,822 - Shewana3_4189 0.64 +0.5 53,939 - Shewana3_4189 0.87 -0.1 53,953 - Shewana3_4189 0.90 +1.6 54,038 + +0.8 54,038 + -1.3 54,039 + +1.5 54,039 + -1.8 54,039 + +0.3 54,039 + -0.9 54,046 - +0.6 54,046 - +1.3 54,046 - +0.6 54,046 - +0.2 54,046 - +0.0 54,054 + +1.1 54,062 - -0.5 54,168 - Shewana3_4190 0.16 -1.9 54,189 - Shewana3_4190 0.21 +0.6 54,193 - Shewana3_4190 0.22 -0.9 54,240 + Shewana3_4190 0.32 -1.0 54,248 - Shewana3_4190 0.34 +0.0 54,267 + Shewana3_4190 0.39 -1.9 54,267 + Shewana3_4190 0.39 +0.9 54,275 - Shewana3_4190 0.40 +1.0 54,275 - Shewana3_4190 0.40 -0.5 54,282 + Shewana3_4190 0.42 +0.7
Or see this region's nucleotide sequence