Strain Fitness in Shewanella amazonensis SB2B around Sama_3628

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
4,270,588	+		Sama_3627	0.68	-0.0
4,270,588	+		Sama_3627	0.68	-1.9
4,270,588	+		Sama_3627	0.68	-0.4
4,270,589	-		Sama_3627	0.68	+0.5
4,270,589	-		Sama_3627	0.68	+1.3
4,270,592	+		Sama_3627	0.68	-0.0
4,270,592	+		Sama_3627	0.68	-2.5
4,270,592	+		Sama_3627	0.68	-2.1
4,270,592	+		Sama_3627	0.68	-0.1
4,270,592	+		Sama_3627	0.68	+0.0
4,270,592	+		Sama_3627	0.68	+0.3
4,270,592	+		Sama_3627	0.68	-0.4
4,270,592	+		Sama_3627	0.68	+0.1
4,270,593	-		Sama_3627	0.68	-0.9
4,270,593	-		Sama_3627	0.68	-0.9
4,270,593	-		Sama_3627	0.68	+0.3
4,270,593	-		Sama_3627	0.68	+0.4
4,270,596	+		Sama_3627	0.68	+0.3
4,270,596	+		Sama_3627	0.68	+0.3
4,270,596	+		Sama_3627	0.68	+1.1
4,270,596	+		Sama_3627	0.68	-0.3
4,270,597	-		Sama_3627	0.68	-0.4
4,270,597	-		Sama_3627	0.68	-0.2
4,270,626	+		Sama_3627	0.70	+0.3
4,270,650	+		Sama_3627	0.71	+1.0
4,270,651	-		Sama_3627	0.71	-0.2
4,270,651	-		Sama_3627	0.71	-0.2
4,270,689	-		Sama_3627	0.73	-0.4
4,270,689	-		Sama_3627	0.73	-0.7
4,270,752	+		Sama_3627	0.76	-1.5
4,270,781	+		Sama_3627	0.77	-0.4
4,270,781	+		Sama_3627	0.77	-0.5
4,270,781	+		Sama_3627	0.77	-0.1
4,270,781	+		Sama_3627	0.77	+1.3
4,270,781	+		Sama_3627	0.77	+0.1
4,270,782	-		Sama_3627	0.77	+0.1
4,270,782	-		Sama_3627	0.77	-0.6
4,270,782	-		Sama_3627	0.77	-1.6
4,270,782	-		Sama_3627	0.77	-1.0
4,270,782	-		Sama_3627	0.77	+0.5
4,270,784	+		Sama_3627	0.77	-0.8
4,270,785	-		Sama_3627	0.77	-0.1
4,270,785	-		Sama_3627	0.77	+0.4
4,270,869	+		Sama_3627	0.81	-0.4
4,270,869	+		Sama_3627	0.81	+0.7
4,270,869	+		Sama_3627	0.81	+0.2
4,270,869	+		Sama_3627	0.81	+0.8
4,270,870	-		Sama_3627	0.81	+0.6
4,270,870	-		Sama_3627	0.81	+0.5
4,270,870	-		Sama_3627	0.81	+0.6
4,270,890	+		Sama_3627	0.82	-1.1
4,270,890	+		Sama_3627	0.82	+0.1
4,270,890	+		Sama_3627	0.82	-0.3
4,270,890	+		Sama_3627	0.82	-1.0
4,270,890	+		Sama_3627	0.82	-0.4
4,270,890	+		Sama_3627	0.82	-0.1
4,270,891	-		Sama_3627	0.82	+0.8
4,270,891	-		Sama_3627	0.82	+2.6
4,270,891	-		Sama_3627	0.82	-0.4
4,270,891	-		Sama_3627	0.82	-0.0
4,270,891	-		Sama_3627	0.82	-0.7
4,270,891	-		Sama_3627	0.82	+0.1
4,270,891	-		Sama_3627	0.82	+0.6
4,270,902	+		Sama_3627	0.83	-0.3
4,270,903	-		Sama_3627	0.83	+0.3
4,270,908	+		Sama_3627	0.83	-0.7
4,270,917	+		Sama_3627	0.83	+1.3
4,270,917	+		Sama_3627	0.83	+0.1
4,270,917	+		Sama_3627	0.83	+0.5
4,270,917	+		Sama_3627	0.83	+0.7
4,270,917	+		Sama_3627	0.83	-1.2
4,270,917	+		Sama_3627	0.83	+0.3
4,270,917	+		Sama_3627	0.83	+0.3
4,270,918	-		Sama_3627	0.83	-0.0
4,270,918	-		Sama_3627	0.83	-0.1
4,270,918	-		Sama_3627	0.83	-0.0
4,270,918	-		Sama_3627	0.83	-0.6
4,270,918	-		Sama_3627	0.83	-0.5
4,270,927	+		Sama_3627	0.84	+0.0
4,270,927	+		Sama_3627	0.84	+0.3
4,270,927	+		Sama_3627	0.84	+0.3
4,270,927	+		Sama_3627	0.84	-0.0
4,270,928	-		Sama_3627	0.84	-0.2
4,270,928	-		Sama_3627	0.84	-0.1
4,270,928	-		Sama_3627	0.84	+0.5
4,270,966	-		Sama_3627	0.86	+0.4
4,270,989	+		Sama_3627	0.87	+0.1
4,270,989	+		Sama_3627	0.87	+1.0
4,270,990	-		Sama_3627	0.87	-0.2
4,270,990	-		Sama_3627	0.87	+0.2
4,271,026	+		Sama_3627	0.88	+0.1
4,271,027	-		Sama_3627	0.88	-0.7
4,271,027	-		Sama_3627	0.88	+0.1
4,271,027	-		Sama_3627	0.88	-0.8
4,271,043	+		Sama_3627	0.89	-1.0
4,271,043	+		Sama_3627	0.89	-2.1
4,271,043	+		Sama_3627	0.89	+1.3
4,271,043	+		Sama_3627	0.89	-0.7
4,271,043	+		Sama_3627	0.89	-0.7
4,271,043	+		Sama_3627	0.89	-2.1
4,271,043	+		Sama_3627	0.89	+0.4
4,271,043	+		Sama_3627	0.89	+1.2
4,271,043	+		Sama_3627	0.89	-0.5
4,271,043	+		Sama_3627	0.89	+0.7
4,271,043	+		Sama_3627	0.89	-1.0
4,271,043	+		Sama_3627	0.89	+0.2
4,271,044	-		Sama_3627	0.89	-2.7
4,271,044	-		Sama_3627	0.89	+0.1
4,271,044	-		Sama_3627	0.89	-0.7
4,271,044	-		Sama_3627	0.89	-0.2
4,271,044	-		Sama_3627	0.89	+0.2
4,271,044	-		Sama_3627	0.89	-1.1
4,271,044	-		Sama_3627	0.89	-1.1
4,271,044	-		Sama_3627	0.89	-0.7
4,271,044	-		Sama_3627	0.89	+2.1
4,271,044	-		Sama_3627	0.89	+0.5
4,271,044	-		Sama_3627	0.89	+0.8
4,271,044	-		Sama_3627	0.89	+0.7
4,271,044	-		Sama_3627	0.89	-0.3
4,271,044	-		Sama_3627	0.89	+2.0
4,271,056	+		Sama_3627	0.90	+0.6
4,271,057	-		Sama_3627	0.90	+0.7
4,271,057	-		Sama_3627	0.90	+0.9
4,271,063	+				+0.4
4,271,063	+				+0.3
4,271,064	-				+1.0
4,271,064	-				-1.7
4,271,121	+				-0.7
4,271,121	+				-0.4
4,271,121	+				+0.1
4,271,121	+				+0.3
4,271,122	-				-1.2
4,271,122	-				-1.2
4,271,122	-				-0.8
4,271,122	-				-0.1
4,271,122	-				+0.1
4,271,122	-				+0.2
4,271,125	+				-0.7
4,271,125	+				+0.5
4,271,125	+				-1.1
4,271,125	+				+1.6
4,271,125	+				-0.3
4,271,125	+				+1.0
4,271,126	-				+0.1
4,271,126	-				+0.1
4,271,126	-				-0.0
4,271,126	-				+0.4
4,271,126	-				+2.7
4,271,187	-				+0.4
4,271,187	-				+0.6
4,271,233	-				-0.3
4,271,234	+				-0.1
4,271,235	-				-0.2
4,271,235	-				-0.2
4,271,235	-				-0.3
4,271,262	-				+0.3
4,271,262	-				-0.4
4,271,267	-				+0.1
4,271,319	+				-0.2
4,271,319	+				+0.4
4,271,319	+				-0.5
4,271,319	+				-0.5
4,271,319	+				+0.2
4,271,319	+				-0.4
4,271,319	+				-0.5
4,271,320	-				+1.3
4,271,320	-				-0.1
4,271,320	-				+0.1
4,271,320	-				+2.9
4,271,370	+				-0.5
4,271,387	+				-1.1
4,271,387	+				-0.0
4,271,388	-				-0.7
4,271,388	-				-0.6
4,271,396	+				-1.5
4,271,396	+				+0.2
4,271,397	-				-0.1
4,271,400	+				-1.0
4,271,400	+				+0.7
4,271,400	+				+1.3
4,271,409	+				+1.5
4,271,409	+				+0.3
4,271,409	+				+0.3
4,271,411	+				+0.3
4,271,411	+				-2.9
4,271,411	+				+2.3
4,271,411	+				+0.2
4,271,411	+				+1.0
4,271,412	-				+1.9
4,271,412	-				-1.2
4,271,412	-				+0.2
4,271,421	+				+0.6
4,271,422	-				-0.4
4,271,422	-				-0.7
4,271,422	-				-0.4
4,271,468	+				-0.3
4,271,468	+				+0.2
4,271,468	+				-1.4
4,271,468	+				-2.9
4,271,468	+				-0.5
4,271,469	-				+0.1
4,271,469	-				+1.0
4,271,488	+				-1.2
4,271,488	+				-0.5
4,271,488	+				-1.3
4,271,488	+				+0.5
4,271,488	+				-0.3
4,271,488	+				-0.4
4,271,488	+				+0.3
4,271,489	-				-0.8
4,271,489	-				+0.5
4,271,489	-				-0.4
4,271,489	-				-1.1
4,271,489	-				+0.5
4,271,489	-				-0.7
4,271,489	-				+0.4
4,271,519	+				+0.6
4,271,527	+				+1.0
4,271,527	+				-1.1
4,271,528	-				-1.1
4,271,528	-				-1.1
4,271,528	-				+0.2
4,271,571	+				+0.2
4,271,571	+				+0.7
4,271,572	-				+0.3
4,271,572	-				+0.2
4,271,572	-				-0.3
4,271,572	-				+0.4
4,271,581	+				+0.1
4,271,581	+				-1.1
4,271,581	+				+0.3
4,271,582	-				-0.3
4,271,582	-				-0.7
4,271,582	-				-0.4
4,271,582	-				-1.3
4,271,582	-				-0.9
4,271,582	-				-0.5
4,271,586	-				-0.0
4,271,586	-				-0.1
4,271,608	+				+0.2
4,271,608	+				-1.0
4,271,608	+				-0.5
4,271,609	-				-0.8
4,271,623	-				-0.6
4,271,623	-				-0.9
4,271,624	+				-0.1
4,271,624	+				-0.3
4,271,624	+				+4.7
4,271,624	+				-1.3
4,271,624	+				+1.1
4,271,624	+				-0.7
4,271,625	-				-2.0
4,271,625	-				-2.0
4,271,625	-				+0.1
4,271,625	-				-0.4
4,271,625	-				-0.0
4,271,625	-				-0.9
4,271,625	-				-0.8
4,271,627	+				-0.9
4,271,627	+				-0.8
4,271,627	+				-1.5
4,271,627	-				+0.5
4,271,627	+				-0.5
4,271,628	-				-0.8
4,271,628	-				-0.8
4,271,628	-				-2.4
4,271,628	-				-1.8
4,271,628	-				-1.8
4,271,628	-				+0.0
4,271,628	-				-1.3
4,271,628	-				-1.6
4,271,628	-				-1.5
4,271,628	-				-0.6
4,271,628	-				+0.6
4,271,628	-				+0.3
4,271,664	+				-2.6
4,271,665	-				-2.3
4,271,665	-				-1.7
4,271,665	-				-2.2
4,271,665	-				-2.7
4,271,759	+		Sama_3628	0.11	-2.9
4,271,760	-		Sama_3628	0.11	-2.6
4,271,790	-		Sama_3628	0.13	-2.0
4,271,790	-		Sama_3628	0.13	-0.7
4,271,790	-		Sama_3628	0.13	-2.0
4,271,885	-		Sama_3628	0.19	-3.3
4,271,895	+		Sama_3628	0.20	-0.7
4,271,896	-		Sama_3628	0.20	-1.1
4,271,926	+		Sama_3628	0.22	-1.5
4,271,926	+		Sama_3628	0.22	-2.7
4,271,954	+		Sama_3628	0.23	-0.1
4,271,955	-		Sama_3628	0.24	-1.6
4,271,955	-		Sama_3628	0.24	-1.4
4,271,955	-		Sama_3628	0.24	-0.9
4,271,955	-		Sama_3628	0.24	-3.6
4,271,955	-		Sama_3628	0.24	-1.9
4,271,955	-		Sama_3628	0.24	-1.7
4,271,955	-		Sama_3628	0.24	-2.5
4,272,028	+		Sama_3628	0.28	-1.7
4,272,028	+		Sama_3628	0.28	-0.1
4,272,029	-		Sama_3628	0.28	-1.5
4,272,041	-		Sama_3628	0.29	-0.8
4,272,082	+		Sama_3628	0.31	-0.3
4,272,082	+		Sama_3628	0.31	-2.0
4,272,082	+		Sama_3628	0.31	-2.3
4,272,082	+		Sama_3628	0.31	-0.9
4,272,083	-		Sama_3628	0.31	-1.3
4,272,107	-		Sama_3628	0.33	+0.5
4,272,107	-		Sama_3628	0.33	-0.3
4,272,113	+		Sama_3628	0.33	-1.4
4,272,113	+		Sama_3628	0.33	-2.0
4,272,113	+		Sama_3628	0.33	-1.1
4,272,113	+		Sama_3628	0.33	-2.7
4,272,113	+		Sama_3628	0.33	-1.3
4,272,113	+		Sama_3628	0.33	-1.4
4,272,114	-		Sama_3628	0.33	-1.5
4,272,114	-		Sama_3628	0.33	-3.7
4,272,114	-		Sama_3628	0.33	-2.1
4,272,114	-		Sama_3628	0.33	-2.5
4,272,114	-		Sama_3628	0.33	-1.3
4,272,114	-		Sama_3628	0.33	-1.1
4,272,114	-		Sama_3628	0.33	-1.9
4,272,114	-		Sama_3628	0.33	-0.4
4,272,142	-		Sama_3628	0.35	-1.7
4,272,158	+		Sama_3628	0.36	-4.0
4,272,159	-		Sama_3628	0.36	-1.3
4,272,159	-		Sama_3628	0.36	-2.7
4,272,159	-		Sama_3628	0.36	-2.3
4,272,159	-		Sama_3628	0.36	-2.7
4,272,192	+		Sama_3628	0.38	-0.7
4,272,192	+		Sama_3628	0.38	-1.8
4,272,193	-		Sama_3628	0.38	-1.7
4,272,193	-		Sama_3628	0.38	-1.7
4,272,221	-		Sama_3628	0.40	-4.2
4,272,221	-		Sama_3628	0.40	-2.1
4,272,221	-		Sama_3628	0.40	-3.6
4,272,221	-		Sama_3628	0.40	+1.3
4,272,282	+		Sama_3628	0.44	-1.6
4,272,312	-		Sama_3628	0.46	-3.1
4,272,422	-		Sama_3628	0.53	-2.0
4,272,422	-		Sama_3628	0.53	-0.1
4,272,558	+		Sama_3628	0.61	-2.0
4,272,559	-		Sama_3628	0.61	-2.5
4,272,583	+		Sama_3628	0.63	-3.3
4,272,621	-		Sama_3628	0.65	-2.6
4,272,621	-		Sama_3628	0.65	-3.2
4,272,734	+		Sama_3628	0.72	-1.0
4,272,818	+		Sama_3628	0.77	-2.3
4,272,883	+		Sama_3628	0.81	-2.3
4,272,883	+		Sama_3628	0.81	-3.3
4,272,884	-		Sama_3628	0.81	-2.1
4,272,884	-		Sama_3628	0.81	-4.0
4,272,884	-		Sama_3628	0.81	-1.5
4,272,910	+		Sama_3628	0.83	-2.2
4,272,910	+		Sama_3628	0.83	-1.9
4,273,109	+				-0.8
4,273,126	+				-0.7
4,273,126	+				-1.6
4,273,256	+				+0.9
4,273,256	+				+0.5
4,273,256	+				-1.4
4,273,256	+				-0.5
4,273,257	-				+0.7
4,273,257	-				-0.7
4,273,257	-				-0.7
4,273,257	-				+1.3
4,273,257	-				+0.1
4,273,257	-				+1.0
4,273,257	-				-1.4
4,273,271	+				-0.1
4,273,272	-				-0.3
4,273,272	-				-0.3
4,273,374	-		Sama_3629	0.15	-1.5
4,273,378	+		Sama_3629	0.16	+0.3
4,273,379	+		Sama_3629	0.16	+0.3
4,273,379	+		Sama_3629	0.16	+2.2
4,273,379	+		Sama_3629	0.16	-1.0
4,273,379	+		Sama_3629	0.16	-0.5
4,273,380	-		Sama_3629	0.16	+0.8
4,273,380	-		Sama_3629	0.16	+0.6
4,273,380	-		Sama_3629	0.16	+0.1
4,273,400	-		Sama_3629	0.19	-0.7
4,273,400	-		Sama_3629	0.19	+0.1
4,273,521	+		Sama_3629	0.35	+0.8
4,273,521	+		Sama_3629	0.35	-0.9
4,273,522	-		Sama_3629	0.35	-0.9
4,273,522	-		Sama_3629	0.35	+1.0
4,273,522	-		Sama_3629	0.35	+0.3
4,273,575	+		Sama_3629	0.42	-0.1
4,273,576	-		Sama_3629	0.42	+0.7
4,273,576	-		Sama_3629	0.42	+0.1
4,273,576	-		Sama_3629	0.42	+1.8
4,273,576	-		Sama_3629	0.42	+0.3
4,273,576	-		Sama_3629	0.42	+0.5
4,273,576	-		Sama_3629	0.42	+3.3
4,273,586	+		Sama_3629	0.43	+0.2
4,273,587	-		Sama_3629	0.43	-0.6
4,273,587	-		Sama_3629	0.43	+1.0
4,273,697	+		Sama_3629	0.58	-0.5
4,273,697	+		Sama_3629	0.58	-0.9
4,273,697	+		Sama_3629	0.58	+0.2
4,273,698	-		Sama_3629	0.58	+0.5
4,273,698	-		Sama_3629	0.58	+0.2
4,273,698	-		Sama_3629	0.58	-1.3
4,273,837	+		Sama_3629	0.76	-0.1
4,273,837	+		Sama_3629	0.76	+0.6
4,273,837	+		Sama_3629	0.76	+0.9
4,273,838	-		Sama_3629	0.76	+1.0
4,273,872	+		Sama_3629	0.81	+0.6
4,273,872	+		Sama_3629	0.81	-0.1
4,273,872	+		Sama_3629	0.81	-1.7
4,273,873	-		Sama_3629	0.81	-0.3
4,273,873	-		Sama_3629	0.81	-0.1
4,273,873	-		Sama_3629	0.81	+0.2
4,273,873	-		Sama_3629	0.81	-1.3
4,273,873	-		Sama_3629	0.81	-1.1
4,273,891	-		Sama_3629	0.83	-1.7
4,273,925	+		Sama_3629	0.88	+0.0
4,273,925	+		Sama_3629	0.88	-0.3
4,273,959	+				+0.6
4,273,959	+				-0.8
4,273,959	+				-0.2
4,273,960	-				-0.1
4,273,960	-				+0.6
4,273,985	+				-0.6
4,273,997	+				-1.3
4,273,997	+				+0.2
4,273,997	+				+0.9
4,274,003	-				-0.3
4,274,003	-				+0.7
4,274,003	-				-1.6
4,274,003	-				-2.9
4,274,068	-				-0.4
4,274,068	-				-0.6
4,274,068	-				-0.5
4,274,140	+		Sama_3630	0.14	-2.1
4,274,140	+		Sama_3630	0.14	-1.1
4,274,140	+		Sama_3630	0.14	-0.1
4,274,140	+		Sama_3630	0.14	-0.4
4,274,140	+		Sama_3630	0.14	+0.4
4,274,141	-		Sama_3630	0.14	-0.3
4,274,141	-		Sama_3630	0.14	+0.7
4,274,141	-		Sama_3630	0.14	+1.1
4,274,141	-		Sama_3630	0.14	+0.3
4,274,141	-		Sama_3630	0.14	-0.2
4,274,141	-		Sama_3630	0.14	-0.1
4,274,141	-		Sama_3630	0.14	-1.0
4,274,141	-		Sama_3630	0.14	-1.3
4,274,141	-		Sama_3630	0.14	-0.8
4,274,169	+		Sama_3630	0.19	+0.1
4,274,170	-		Sama_3630	0.20	+0.1
4,274,170	-		Sama_3630	0.20	-0.7
4,274,170	-		Sama_3630	0.20	-0.6
4,274,181	+		Sama_3630	0.22	+0.7
4,274,181	+		Sama_3630	0.22	-0.3
4,274,181	+		Sama_3630	0.22	-0.8
4,274,181	+		Sama_3630	0.22	+1.3
4,274,181	+		Sama_3630	0.22	-2.5
4,274,182	-		Sama_3630	0.22	-0.7
4,274,182	-		Sama_3630	0.22	+0.8
4,274,182	-		Sama_3630	0.22	+3.9