Strain Fitness in Shewanella amazonensis SB2B around Sama_3158

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,743,903	-				+2.4
3,743,963	+				-1.7
3,743,963	+				+1.2
3,744,005	+				+2.0
3,744,033	+				-0.1
3,744,033	+				-0.8
3,744,033	+				+1.7
3,744,034	-				-0.4
3,744,113	+		Sama_3157	0.18	-0.9
3,744,113	+		Sama_3157	0.18	+0.7
3,744,113	+		Sama_3157	0.18	-0.4
3,744,114	-		Sama_3157	0.18	-0.8
3,744,114	-		Sama_3157	0.18	+0.2
3,744,157	+		Sama_3157	0.23	+0.9
3,744,157	+		Sama_3157	0.23	-0.1
3,744,157	+		Sama_3157	0.23	-0.6
3,744,157	+		Sama_3157	0.23	+0.6
3,744,157	+		Sama_3157	0.23	+0.6
3,744,157	+		Sama_3157	0.23	+1.4
3,744,158	-		Sama_3157	0.23	-0.6
3,744,158	-		Sama_3157	0.23	+0.2
3,744,158	-		Sama_3157	0.23	-0.0
3,744,158	-		Sama_3157	0.23	+0.2
3,744,158	-		Sama_3157	0.23	-0.9
3,744,159	+		Sama_3157	0.23	-0.5
3,744,159	+		Sama_3157	0.23	-0.2
3,744,159	+		Sama_3157	0.23	+0.1
3,744,160	-		Sama_3157	0.24	-0.1
3,744,160	-		Sama_3157	0.24	-0.6
3,744,190	+		Sama_3157	0.27	+0.1
3,744,190	+		Sama_3157	0.27	+0.2
3,744,190	+		Sama_3157	0.27	-0.0
3,744,191	-		Sama_3157	0.27	-0.6
3,744,191	-		Sama_3157	0.27	-1.1
3,744,191	-		Sama_3157	0.27	-0.7
3,744,191	-		Sama_3157	0.27	+0.1
3,744,191	-		Sama_3157	0.27	-2.0
3,744,191	-		Sama_3157	0.27	+0.8
3,744,191	-		Sama_3157	0.27	-0.1
3,744,191	-		Sama_3157	0.27	-0.8
3,744,228	+		Sama_3157	0.32	+1.7
3,744,228	+		Sama_3157	0.32	+0.2
3,744,228	+		Sama_3157	0.32	-0.6
3,744,228	+		Sama_3157	0.32	-0.5
3,744,228	+		Sama_3157	0.32	-0.8
3,744,229	-		Sama_3157	0.32	-0.1
3,744,229	-		Sama_3157	0.32	-0.1
3,744,229	-		Sama_3157	0.32	+0.2
3,744,229	-		Sama_3157	0.32	-0.9
3,744,303	+		Sama_3157	0.41	+0.1
3,744,304	-		Sama_3157	0.42	+0.4
3,744,304	-		Sama_3157	0.42	-1.0
3,744,304	-		Sama_3157	0.42	-1.0
3,744,345	+		Sama_3157	0.47	+2.5
3,744,442	-		Sama_3157	0.59	+1.9
3,744,465	+		Sama_3157	0.62	+0.6
3,744,465	+		Sama_3157	0.62	-0.4
3,744,465	+		Sama_3157	0.62	+1.9
3,744,466	-		Sama_3157	0.62	-1.1
3,744,466	-		Sama_3157	0.62	-0.4
3,744,522	+		Sama_3157	0.69	-1.8
3,744,522	+		Sama_3157	0.69	+0.2
3,744,523	-		Sama_3157	0.69	-0.0
3,744,523	-		Sama_3157	0.69	-0.2
3,744,559	+		Sama_3157	0.73	-0.2
3,744,627	+		Sama_3157	0.82	-0.4
3,744,627	+		Sama_3157	0.82	-1.4
3,744,628	-		Sama_3157	0.82	-0.6
3,744,671	+		Sama_3157	0.87	+0.2
3,744,672	-		Sama_3157	0.88	+0.1
3,744,712	-				+1.0
3,744,748	+				+0.9
3,744,749	-				+0.4
3,744,769	+				-2.1
3,744,769	+				+0.3
3,744,839	+				+0.1
3,744,856	+				-0.1
3,744,857	-				-0.4
3,744,857	-				-1.1
3,744,875	+				-1.0
3,744,875	+				-1.6
3,744,875	+				+0.3
3,744,876	-				+0.3
3,744,876	-				-1.3
3,744,876	-				+0.2
3,744,893	+				-0.8
3,744,893	+				-0.6
3,744,893	+				-1.0
3,744,893	+				-0.9
3,744,894	-				+1.2
3,744,894	-				-1.1
3,744,894	-				+0.2
3,744,897	+				-0.0
3,744,897	+				+2.5
3,744,897	+				+0.6
3,744,897	+				-0.3
3,744,897	+				+0.4
3,744,897	+				-0.4
3,744,897	+				-0.8
3,744,897	+				-0.6
3,744,897	+				-1.1
3,744,897	+				+0.1
3,744,897	+				-0.8
3,744,897	+				-0.4
3,744,897	+				+1.5
3,744,897	+				+0.2
3,744,897	+				-0.6
3,744,898	-				-0.1
3,744,898	-				-0.5
3,744,898	-				-0.6
3,744,898	-				-0.6
3,744,898	-				+0.4
3,744,898	-				-1.1
3,744,902	+				-0.4
3,744,902	+				-1.0
3,744,902	+				+1.0
3,744,903	-				-0.5
3,744,903	-				-0.6
3,744,903	-				-0.5
3,744,903	-				+0.6
3,744,903	-				+1.8
3,744,903	-				-1.3
3,744,903	-				-0.5
3,744,921	-				-0.4
3,745,036	+		Sama_3158	0.49	+0.0
3,745,036	+		Sama_3158	0.49	-2.6
3,745,036	+		Sama_3158	0.49	+0.4
3,745,036	+		Sama_3158	0.49	-0.3
3,745,037	-		Sama_3158	0.49	-2.5
3,745,037	-		Sama_3158	0.49	+3.2
3,745,168	+				-0.4
3,745,168	+				-0.4
3,745,168	+				-0.6
3,745,168	+				-0.2
3,745,168	+				-0.1
3,745,168	+				-1.2
3,745,169	-				+1.4
3,745,173	+				+0.2
3,745,173	+				+1.3
3,745,173	+				-2.0
3,745,173	+				-0.2
3,745,173	+				-0.6
3,745,174	-				-0.6
3,745,174	-				-1.1
3,745,236	+				+0.2
3,745,236	+				-0.4
3,745,236	+				-1.7
3,745,236	+				-2.5
3,745,236	+				+0.2
3,745,236	+				+0.1
3,745,236	+				-2.0
3,745,236	+				-1.3
3,745,236	+				+1.5
3,745,236	+				+0.1
3,745,236	+				+0.4
3,745,236	+				-1.8
3,745,236	+				-0.5
3,745,236	+				-0.5
3,745,236	+				+1.2
3,745,236	+				-0.2
3,745,237	-				-0.0
3,745,237	-				+1.0
3,745,237	-				+0.4
3,745,237	-				+0.6
3,745,237	-				+0.2
3,745,237	-				+0.3
3,745,237	-				+0.5
3,745,237	-				+0.8
3,745,237	-				+0.4
3,745,237	-				-0.4
3,745,237	-				+0.3
3,745,237	-				-0.6
3,745,237	-				+1.5
3,745,237	-				-0.4
3,745,237	-				-0.1
3,745,237	-				+0.4
3,745,237	-				+0.2
3,745,343	+				-0.0
3,745,343	+				-0.3
3,745,343	+				+0.2
3,745,344	-				-0.9
3,745,344	-				+0.3
3,745,348	-				-0.6
3,745,360	+				-0.9
3,745,361	-				+0.3
3,745,361	-				-0.1
3,745,361	-				+1.3
3,745,361	-				-0.4
3,745,366	+				+0.8
3,745,366	+				+0.8
3,745,366	+				-1.0
3,745,366	+				-0.6
3,745,366	+				+0.4
3,745,367	-				+2.3
3,745,367	-				-0.3
3,745,367	-				+0.6
3,745,367	-				+0.2
3,745,367	-				+1.2
3,745,367	-				+2.0
3,745,367	-				-0.2
3,745,375	+				-0.2
3,745,375	+				+1.8
3,745,375	+				-2.1
3,745,375	+				+0.1
3,745,375	+				-0.4
3,745,375	+				-0.3
3,745,376	-				+0.6
3,745,376	-				-0.3
3,745,376	-				+2.1
3,745,376	-				-1.4
3,745,392	+				-0.1
3,745,392	+				-0.2
3,745,393	-				-0.1
3,745,393	-				+0.2
3,745,393	-				-0.4
3,745,406	+				-0.5
3,745,406	+				+0.3
3,745,407	-				-0.1
3,745,407	-				+0.9
3,745,476	+		Sama_3159	0.12	-0.1
3,745,476	+		Sama_3159	0.12	-1.4
3,745,477	-		Sama_3159	0.12	-0.8
3,745,491	+		Sama_3159	0.14	+1.8
3,745,492	-		Sama_3159	0.14	+0.4
3,745,495	+		Sama_3159	0.14	-1.1
3,745,495	+		Sama_3159	0.14	-0.1
3,745,495	+		Sama_3159	0.14	-0.5
3,745,495	+		Sama_3159	0.14	-0.2
3,745,496	-		Sama_3159	0.14	+0.7
3,745,496	-		Sama_3159	0.14	-0.1
3,745,496	-		Sama_3159	0.14	+0.1
3,745,496	-		Sama_3159	0.14	-0.3
3,745,530	+		Sama_3159	0.19	-0.4
3,745,530	+		Sama_3159	0.19	+0.7
3,745,530	+		Sama_3159	0.19	-2.4
3,745,530	+		Sama_3159	0.19	+0.0
3,745,530	+		Sama_3159	0.19	-0.2
3,745,530	+		Sama_3159	0.19	-1.4
3,745,531	-		Sama_3159	0.20	+0.0
3,745,556	-		Sama_3159	0.23	+0.4
3,745,620	+		Sama_3159	0.32	+0.2
3,745,620	+		Sama_3159	0.32	+0.6
3,745,620	+		Sama_3159	0.32	+0.2
3,745,620	+		Sama_3159	0.32	-0.6
3,745,620	+		Sama_3159	0.32	+0.2
3,745,620	+		Sama_3159	0.32	-0.4
3,745,620	+		Sama_3159	0.32	-0.2
3,745,620	+		Sama_3159	0.32	-0.7
3,745,620	+		Sama_3159	0.32	+0.5
3,745,621	-		Sama_3159	0.33	-1.2
3,745,621	-		Sama_3159	0.33	-0.4
3,745,621	-		Sama_3159	0.33	-0.3
3,745,621	-		Sama_3159	0.33	+1.0
3,745,621	-		Sama_3159	0.33	-0.6
3,745,640	-		Sama_3159	0.35	-1.1
3,745,648	+		Sama_3159	0.37	+0.7
3,745,648	+		Sama_3159	0.37	+0.3
3,745,649	-		Sama_3159	0.37	-1.1
3,745,649	-		Sama_3159	0.37	+0.3
3,745,650	+		Sama_3159	0.37	+0.3
3,745,651	-		Sama_3159	0.37	+0.2
3,745,651	-		Sama_3159	0.37	+0.5
3,745,659	+		Sama_3159	0.38	+0.9
3,745,659	+		Sama_3159	0.38	-0.8
3,745,690	+		Sama_3159	0.43	+0.4
3,745,691	-		Sama_3159	0.43	+0.2
3,745,691	-		Sama_3159	0.43	-2.4
3,745,696	+		Sama_3159	0.43	+0.3
3,745,696	+		Sama_3159	0.43	+0.7
3,745,697	-		Sama_3159	0.44	+0.2
3,745,697	-		Sama_3159	0.44	+0.1
3,745,699	+		Sama_3159	0.44	+0.5
3,745,699	+		Sama_3159	0.44	-0.1
3,745,699	+		Sama_3159	0.44	-0.1
3,745,699	+		Sama_3159	0.44	+0.4
3,745,699	+		Sama_3159	0.44	+0.9
3,745,699	+		Sama_3159	0.44	-0.1
3,745,699	+		Sama_3159	0.44	-1.1
3,745,699	+		Sama_3159	0.44	-1.0
3,745,699	+		Sama_3159	0.44	+1.2
3,745,700	-		Sama_3159	0.44	+1.6
3,745,700	-		Sama_3159	0.44	+0.4
3,745,700	-		Sama_3159	0.44	-0.1
3,745,700	-		Sama_3159	0.44	-0.4
3,745,700	-		Sama_3159	0.44	-1.3
3,745,700	-		Sama_3159	0.44	+0.6
3,745,700	-		Sama_3159	0.44	-0.6
3,745,744	+		Sama_3159	0.50	-0.2
3,745,744	+		Sama_3159	0.50	-0.9
3,745,744	+		Sama_3159	0.50	-0.0
3,745,744	+		Sama_3159	0.50	-0.4
3,745,744	+		Sama_3159	0.50	+0.2
3,745,744	+		Sama_3159	0.50	-0.9
3,745,744	+		Sama_3159	0.50	+1.1
3,745,745	-		Sama_3159	0.51	-1.5
3,745,781	-		Sama_3159	0.56	+1.2
3,745,810	-		Sama_3159	0.60	-0.4
3,745,839	+		Sama_3159	0.64	+1.0
3,745,840	-		Sama_3159	0.64	-0.7
3,745,840	-		Sama_3159	0.64	-1.4
3,745,847	-		Sama_3159	0.65	-1.0
3,745,904	-		Sama_3159	0.74	-0.1
3,745,904	-		Sama_3159	0.74	+0.3
3,745,909	+		Sama_3159	0.74	-0.5
3,745,910	-		Sama_3159	0.74	+1.2
3,745,910	-		Sama_3159	0.74	+0.4
3,745,931	+		Sama_3159	0.78	+0.5
3,745,931	+		Sama_3159	0.78	-0.1
3,745,932	-		Sama_3159	0.78	+1.2
3,745,939	+		Sama_3159	0.79	+0.4
3,745,939	+		Sama_3159	0.79	-0.3
3,745,940	-		Sama_3159	0.79	-0.0
3,745,955	-		Sama_3159	0.81	-1.8
3,745,964	-		Sama_3159	0.82	+0.2
3,746,010	+		Sama_3159	0.89	+0.7
3,746,010	+		Sama_3159	0.89	-0.9
3,746,010	+		Sama_3159	0.89	+0.4
3,746,010	+		Sama_3159	0.89	+0.6
3,746,011	-		Sama_3159	0.89	-0.9
3,746,011	-		Sama_3159	0.89	-0.7
3,746,011	-		Sama_3159	0.89	-0.7
3,746,011	-		Sama_3159	0.89	-0.8
3,746,011	-		Sama_3159	0.89	+0.1
3,746,015	+		Sama_3159	0.90	+0.0
3,746,015	+		Sama_3159	0.90	+0.7
3,746,015	+		Sama_3159	0.90	+1.0
3,746,015	+		Sama_3159	0.90	+0.8
3,746,015	+		Sama_3159	0.90	-0.7
3,746,016	-		Sama_3159	0.90	-1.1
3,746,016	-		Sama_3159	0.90	-0.4
3,746,016	-		Sama_3159	0.90	+0.1
3,746,016	-		Sama_3159	0.90	+0.2
3,746,016	-		Sama_3159	0.90	+1.1
3,746,016	-		Sama_3159	0.90	-1.1
3,746,068	+				-0.4
3,746,069	-				-0.7
3,746,088	-				-0.3
3,746,156	+				+1.2
3,746,156	+				-1.0
3,746,157	-				-0.8
3,746,158	+				-0.4
3,746,158	+				+0.6
3,746,158	+				-0.5
3,746,158	+				-0.4
3,746,158	+				-1.0
3,746,158	+				+0.4
3,746,158	+				+0.4
3,746,158	+				-1.1
3,746,159	-				-0.9
3,746,159	-				-0.6
3,746,159	-				+0.2
3,746,159	-				-0.2
3,746,159	-				-0.8
3,746,159	-				-0.1
3,746,159	-				-1.7