Strain Fitness in Shewanella amazonensis SB2B around Sama_2336

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,800,746	+				+4.3
2,800,746	+				+3.1
2,800,747	-				+4.0
2,800,747	-				+4.1
2,800,762	+				+2.7
2,800,762	+				+4.4
2,800,818	+		Sama_2335	0.15	+3.7
2,800,827	+		Sama_2335	0.16	+5.3
2,800,827	+		Sama_2335	0.16	+4.8
2,800,827	+		Sama_2335	0.16	+4.2
2,800,828	-		Sama_2335	0.16	+4.1
2,800,854	+		Sama_2335	0.19	+5.2
2,800,933	+		Sama_2335	0.26	-0.1
2,800,933	+		Sama_2335	0.26	+2.4
2,800,934	-		Sama_2335	0.26	+4.0
2,800,941	+		Sama_2335	0.27	+4.0
2,801,005	+		Sama_2335	0.33	+4.2
2,801,005	+		Sama_2335	0.33	+4.3
2,801,005	+		Sama_2335	0.33	+4.2
2,801,005	+		Sama_2335	0.33	+4.3
2,801,005	+		Sama_2335	0.33	+4.0
2,801,005	+		Sama_2335	0.33	+4.6
2,801,005	+		Sama_2335	0.33	+3.7
2,801,006	-		Sama_2335	0.33	+2.0
2,801,006	-		Sama_2335	0.33	+4.0
2,801,010	-		Sama_2335	0.33	+4.2
2,801,092	+		Sama_2335	0.41	+2.1
2,801,093	-		Sama_2335	0.41	+4.8
2,801,098	-		Sama_2335	0.42	+4.7
2,801,129	-		Sama_2335	0.44	+4.1
2,801,162	+		Sama_2335	0.48	+3.8
2,801,167	-		Sama_2335	0.48	+3.3
2,801,167	-		Sama_2335	0.48	+3.9
2,801,240	+		Sama_2335	0.55	+3.6
2,801,240	+		Sama_2335	0.55	+2.8
2,801,241	-		Sama_2335	0.55	+4.0
2,801,340	+		Sama_2335	0.64	+4.1
2,801,340	+		Sama_2335	0.64	+4.4
2,801,340	+		Sama_2335	0.64	+4.4
2,801,341	-		Sama_2335	0.64	+4.3
2,801,420	+		Sama_2335	0.72	+4.4
2,801,426	+		Sama_2335	0.73	+5.0
2,801,438	+		Sama_2335	0.74	+4.1
2,801,494	-		Sama_2335	0.79	+4.4
2,801,523	-		Sama_2335	0.82	+2.9
2,801,523	-		Sama_2335	0.82	+2.9
2,801,529	+		Sama_2335	0.82	+4.1
2,801,541	+		Sama_2335	0.83	+4.4
2,801,543	+		Sama_2335	0.84	+4.1
2,801,545	+		Sama_2335	0.84	+3.9
2,801,546	-		Sama_2335	0.84	+2.9
2,801,571	+		Sama_2335	0.86	+3.5
2,801,571	+		Sama_2335	0.86	+0.6
2,801,571	+		Sama_2335	0.86	+4.0
2,801,571	+		Sama_2335	0.86	+3.3
2,801,571	+		Sama_2335	0.86	+3.7
2,801,571	+		Sama_2335	0.86	+3.7
2,801,571	+		Sama_2335	0.86	+4.5
2,801,572	-		Sama_2335	0.86	+3.8
2,801,575	+		Sama_2335	0.87	+4.8
2,801,575	+		Sama_2335	0.87	+3.8
2,801,576	-		Sama_2335	0.87	+3.7
2,801,576	-		Sama_2335	0.87	+4.5
2,801,586	+		Sama_2335	0.88	+3.8
2,801,632	+				+4.5
2,801,788	-		Sama_2336	0.10	+4.0
2,801,788	-		Sama_2336	0.10	+3.0
2,801,796	-		Sama_2336	0.11	+2.7
2,801,799	+		Sama_2336	0.12	+6.6
2,801,829	+		Sama_2336	0.16	+2.3
2,801,865	-		Sama_2336	0.21	+3.8
2,801,899	+		Sama_2336	0.26	+4.0
2,801,912	+		Sama_2336	0.28	+3.1
2,801,913	-		Sama_2336	0.28	+3.1
2,801,984	+		Sama_2336	0.38	+3.6
2,801,984	+		Sama_2336	0.38	+3.1
2,801,985	-		Sama_2336	0.38	+3.6
2,801,985	-		Sama_2336	0.38	+4.1
2,801,986	+		Sama_2336	0.39	+4.4
2,801,987	-		Sama_2336	0.39	+3.9
2,801,988	+		Sama_2336	0.39	+4.6
2,801,989	-		Sama_2336	0.39	+3.4
2,801,989	-		Sama_2336	0.39	+4.2
2,801,989	-		Sama_2336	0.39	+3.3
2,801,989	-		Sama_2336	0.39	+3.0
2,801,989	-		Sama_2336	0.39	+3.4
2,801,989	-		Sama_2336	0.39	+3.4
2,801,989	-		Sama_2336	0.39	+4.5
2,801,993	+		Sama_2336	0.40	+5.7
2,802,001	+		Sama_2336	0.41	+3.5
2,802,001	+		Sama_2336	0.41	+2.5
2,802,001	+		Sama_2336	0.41	+4.3
2,802,002	-		Sama_2336	0.41	+3.9
2,802,002	-		Sama_2336	0.41	+2.8
2,802,002	-		Sama_2336	0.41	+2.8
2,802,009	+		Sama_2336	0.42	+3.3
2,802,009	+		Sama_2336	0.42	+2.8
2,802,010	-		Sama_2336	0.42	+3.9
2,802,014	-		Sama_2336	0.43	+3.3
2,802,014	-		Sama_2336	0.43	+3.2
2,802,068	+		Sama_2336	0.50	+3.7
2,802,068	+		Sama_2336	0.50	+2.9
2,802,068	+		Sama_2336	0.50	+3.3
2,802,069	-		Sama_2336	0.51	+3.8
2,802,069	-		Sama_2336	0.51	+2.8
2,802,069	-		Sama_2336	0.51	+2.2
2,802,069	-		Sama_2336	0.51	+4.5
2,802,069	-		Sama_2336	0.51	+3.7
2,802,069	-		Sama_2336	0.51	+2.7
2,802,157	-		Sama_2336	0.63	+5.0
2,802,157	-		Sama_2336	0.63	+3.1
2,802,157	-		Sama_2336	0.63	+3.3
2,802,298	-		Sama_2336	0.83	+2.1
2,802,322	+		Sama_2336	0.87	+4.8
2,802,323	-		Sama_2336	0.87	+3.7
2,802,323	-		Sama_2336	0.87	+3.5
2,802,394	-				+0.2
2,802,454	-				-0.8
2,802,490	+				+1.7
2,802,512	-				-0.4
2,802,545	-				+0.2
2,802,586	-				+1.3
2,802,591	-				+0.1
2,802,603	+				+0.5
2,802,604	-				-0.2
2,802,663	+				+0.4
2,802,664	-				-0.0
2,802,664	-				-1.9
2,802,666	+				-1.9
2,802,666	+				-2.7
2,802,666	+				+0.1
2,802,667	-				-0.3
2,802,667	-				-0.9
2,802,667	-				-0.4
2,802,720	+				-0.6
2,802,728	+				-1.3
2,802,729	-				+0.8
2,802,729	-				-0.3
2,802,742	-				+2.3
2,802,747	+				-1.5
2,802,748	-				+0.0
2,802,748	-				+1.1
2,802,748	-				-0.0
2,802,748	-				-2.9
2,802,748	-				+1.0
2,802,748	-				+0.0
2,802,748	-				+1.0
2,802,748	-				+0.4
2,802,748	-				-0.3
2,802,879	+				+2.4
2,802,880	-				+3.3
2,802,900	-				+2.4
2,802,979	-				+3.5
2,802,985	+				+2.3
2,802,986	-				+2.8
2,802,989	-				+1.9
2,803,018	-				+3.7
2,803,021	+				+3.0
2,803,021	+				+1.7
2,803,022	-				+3.4
2,803,096	+		Sama_2337	0.11	+3.2
2,803,103	-		Sama_2337	0.11	+1.6
2,803,127	-		Sama_2337	0.12	+3.1
2,803,176	-		Sama_2337	0.14	+2.9
2,803,186	-		Sama_2337	0.15	+2.5
2,803,190	+		Sama_2337	0.15	+3.7
2,803,212	+		Sama_2337	0.16	+2.4
2,803,233	+		Sama_2337	0.17	+3.9
2,803,239	+		Sama_2337	0.17	+2.1
2,803,239	+		Sama_2337	0.17	+3.1
2,803,240	-		Sama_2337	0.17	+3.2
2,803,240	-		Sama_2337	0.17	+3.4
2,803,251	+		Sama_2337	0.17	+3.0
2,803,251	+		Sama_2337	0.17	+3.2
2,803,252	-		Sama_2337	0.17	+2.6
2,803,282	+		Sama_2337	0.19	+2.9
2,803,372	+		Sama_2337	0.22	+2.8