Strain Fitness in Shewanella amazonensis SB2B around Sama_0150

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
171,683	-		Sama_0149	0.27	+0.1
171,697	+		Sama_0149	0.29	-0.6
171,697	+		Sama_0149	0.29	+0.0
171,697	+		Sama_0149	0.29	+0.2
171,697	+		Sama_0149	0.29	-0.6
171,697	+		Sama_0149	0.29	-0.0
171,697	+		Sama_0149	0.29	-0.4
171,697	+		Sama_0149	0.29	+0.2
171,697	+		Sama_0149	0.29	+0.5
171,697	+		Sama_0149	0.29	+1.3
171,697	+		Sama_0149	0.29	-0.1
171,697	+		Sama_0149	0.29	-1.4
171,697	+		Sama_0149	0.29	+0.8
171,697	+		Sama_0149	0.29	-1.6
171,697	+		Sama_0149	0.29	+0.0
171,697	+		Sama_0149	0.29	-0.2
171,697	+		Sama_0149	0.29	-0.4
171,697	+		Sama_0149	0.29	-1.3
171,697	+		Sama_0149	0.29	+0.6
171,697	+		Sama_0149	0.29	-0.7
171,697	+		Sama_0149	0.29	-0.4
171,697	+		Sama_0149	0.29	-0.7
171,698	-		Sama_0149	0.29	+0.5
171,698	-		Sama_0149	0.29	-0.9
171,698	-		Sama_0149	0.29	-1.0
171,698	-		Sama_0149	0.29	+0.6
171,698	-		Sama_0149	0.29	+0.8
171,698	-		Sama_0149	0.29	+1.4
171,698	-		Sama_0149	0.29	+0.0
171,698	-		Sama_0149	0.29	+0.1
171,698	-		Sama_0149	0.29	-0.6
171,698	-		Sama_0149	0.29	-0.8
171,698	-		Sama_0149	0.29	+0.1
171,698	-		Sama_0149	0.29	-0.2
171,698	-		Sama_0149	0.29	+1.1
171,698	-		Sama_0149	0.29	+0.2
171,698	-		Sama_0149	0.29	+0.3
171,698	-		Sama_0149	0.29	+0.2
171,698	-		Sama_0149	0.29	-2.5
171,698	-		Sama_0149	0.29	-0.4
171,698	-		Sama_0149	0.29	+0.1
171,722	+		Sama_0149	0.32	-0.7
171,814	+		Sama_0149	0.42	-1.2
171,814	+		Sama_0149	0.42	-1.0
171,815	-		Sama_0149	0.42	+0.2
171,815	-		Sama_0149	0.42	-2.9
171,815	-		Sama_0149	0.42	-1.2
171,815	-		Sama_0149	0.42	-0.2
171,815	-		Sama_0149	0.42	+1.3
171,815	-		Sama_0149	0.42	-0.0
171,815	-		Sama_0149	0.42	-0.1
171,832	-		Sama_0149	0.44	-1.3
171,833	+		Sama_0149	0.44	-1.0
171,834	-		Sama_0149	0.44	-0.3
171,834	-		Sama_0149	0.44	-1.5
171,834	-		Sama_0149	0.44	-0.1
171,834	-		Sama_0149	0.44	-0.4
171,859	+		Sama_0149	0.47	+0.8
171,859	+		Sama_0149	0.47	+0.8
171,859	+		Sama_0149	0.47	+1.3
171,860	-		Sama_0149	0.47	+1.0
171,860	-		Sama_0149	0.47	-1.7
171,860	-		Sama_0149	0.47	-1.6
171,860	-		Sama_0149	0.47	-0.4
171,898	+		Sama_0149	0.52	-0.1
171,898	+		Sama_0149	0.52	+0.2
171,898	+		Sama_0149	0.52	-0.2
171,898	+		Sama_0149	0.52	-1.4
171,898	+		Sama_0149	0.52	-1.0
171,899	-		Sama_0149	0.52	-1.2
171,899	-		Sama_0149	0.52	-0.6
171,899	-		Sama_0149	0.52	-0.4
171,899	-		Sama_0149	0.52	-0.8
171,899	-		Sama_0149	0.52	+0.2
171,899	-		Sama_0149	0.52	+0.2
171,899	-		Sama_0149	0.52	-1.8
171,947	+		Sama_0149	0.57	+0.5
171,947	+		Sama_0149	0.57	+0.2
171,947	+		Sama_0149	0.57	-0.3
171,947	+		Sama_0149	0.57	+2.0
171,947	+		Sama_0149	0.57	+1.0
171,947	+		Sama_0149	0.57	+1.0
171,947	+		Sama_0149	0.57	+0.7
171,947	+		Sama_0149	0.57	-1.0
171,947	+		Sama_0149	0.57	+0.6
171,947	+		Sama_0149	0.57	+0.8
171,947	+		Sama_0149	0.57	-1.7
171,947	+		Sama_0149	0.57	+0.7
171,947	+		Sama_0149	0.57	+0.3
171,948	-		Sama_0149	0.57	-1.3
171,948	-		Sama_0149	0.57	-0.5
171,948	-		Sama_0149	0.57	-0.0
171,948	-		Sama_0149	0.57	+0.6
171,948	-		Sama_0149	0.57	-0.8
171,948	-		Sama_0149	0.57	+0.3
171,951	+		Sama_0149	0.58	-1.7
171,951	+		Sama_0149	0.58	+0.3
171,951	+		Sama_0149	0.58	+0.9
171,951	+		Sama_0149	0.58	-0.5
171,951	+		Sama_0149	0.58	-0.3
171,951	+		Sama_0149	0.58	+0.8
171,951	+		Sama_0149	0.58	-0.2
171,951	+		Sama_0149	0.58	-0.5
171,951	+		Sama_0149	0.58	-0.0
171,952	-		Sama_0149	0.58	+1.0
171,952	-		Sama_0149	0.58	-0.5
171,952	-		Sama_0149	0.58	-0.1
171,952	-		Sama_0149	0.58	-0.3
171,952	-		Sama_0149	0.58	-0.6
171,952	-		Sama_0149	0.58	-1.9
171,952	-		Sama_0149	0.58	-0.3
171,952	-		Sama_0149	0.58	+1.2
171,952	-		Sama_0149	0.58	-0.0
171,952	-		Sama_0149	0.58	+0.1
171,952	-		Sama_0149	0.58	+0.3
171,952	-		Sama_0149	0.58	+1.3
171,952	-		Sama_0149	0.58	-1.0
171,952	-		Sama_0149	0.58	-0.2
171,952	-		Sama_0149	0.58	+0.8
171,956	+		Sama_0149	0.58	-1.2
171,956	+		Sama_0149	0.58	+0.8
171,956	+		Sama_0149	0.58	+0.2
171,956	+		Sama_0149	0.58	-0.8
171,956	-		Sama_0149	0.58	-0.3
171,956	+		Sama_0149	0.58	-0.1
171,956	+		Sama_0149	0.58	-0.3
171,956	+		Sama_0149	0.58	-0.3
171,957	-		Sama_0149	0.58	-1.2
171,957	-		Sama_0149	0.58	+1.0
171,957	-		Sama_0149	0.58	-0.8
171,957	-		Sama_0149	0.58	-0.3
171,957	-		Sama_0149	0.58	+0.2
171,957	-		Sama_0149	0.58	+0.6
171,957	-		Sama_0149	0.58	-1.0
171,957	-		Sama_0149	0.58	-0.1
171,957	-		Sama_0149	0.58	-0.3
171,957	-		Sama_0149	0.58	+3.1
171,957	-		Sama_0149	0.58	-1.8
171,962	+		Sama_0149	0.59	-0.8
171,962	+		Sama_0149	0.59	+0.1
171,981	+		Sama_0149	0.61	+0.3
171,982	-		Sama_0149	0.61	+1.5
171,982	-		Sama_0149	0.61	-0.7
171,982	-		Sama_0149	0.61	+0.7
171,982	-		Sama_0149	0.61	+0.7
171,982	-		Sama_0149	0.61	-0.6
171,998	+		Sama_0149	0.63	+0.6
171,998	+		Sama_0149	0.63	+0.7
171,998	+		Sama_0149	0.63	-0.5
171,999	-		Sama_0149	0.63	-0.1
172,050	+		Sama_0149	0.69	+0.7
172,050	+		Sama_0149	0.69	+0.4
172,051	-		Sama_0149	0.69	-0.6
172,051	-		Sama_0149	0.69	-0.4
172,051	-		Sama_0149	0.69	-0.3
172,051	-		Sama_0149	0.69	+0.6
172,067	+		Sama_0149	0.71	-2.2
172,067	+		Sama_0149	0.71	-0.1
172,067	+		Sama_0149	0.71	-1.3
172,067	+		Sama_0149	0.71	+1.1
172,067	+		Sama_0149	0.71	+0.7
172,067	+		Sama_0149	0.71	+1.3
172,067	+		Sama_0149	0.71	+0.5
172,068	-		Sama_0149	0.71	+0.2
172,068	-		Sama_0149	0.71	-0.5
172,068	-		Sama_0149	0.71	+0.3
172,071	+		Sama_0149	0.71	-0.0
172,071	+		Sama_0149	0.71	+0.0
172,071	+		Sama_0149	0.71	+0.4
172,071	+		Sama_0149	0.71	-0.7
172,071	+		Sama_0149	0.71	+1.7
172,071	+		Sama_0149	0.71	-0.6
172,072	-		Sama_0149	0.71	-1.1
172,072	-		Sama_0149	0.71	-0.0
172,086	+		Sama_0149	0.73	+1.0
172,086	+		Sama_0149	0.73	-0.1
172,086	+		Sama_0149	0.73	+1.0
172,086	+		Sama_0149	0.73	-1.0
172,087	-		Sama_0149	0.73	-1.2
172,087	-		Sama_0149	0.73	+0.3
172,087	-		Sama_0149	0.73	-0.0
172,087	-		Sama_0149	0.73	+0.6
172,106	+		Sama_0149	0.75	-1.5
172,106	+		Sama_0149	0.75	-0.3
172,106	+		Sama_0149	0.75	-0.8
172,107	-		Sama_0149	0.75	+0.3
172,107	-		Sama_0149	0.75	-3.2
172,107	-		Sama_0149	0.75	-0.4
172,119	+		Sama_0149	0.77	+0.6
172,119	+		Sama_0149	0.77	+0.1
172,119	+		Sama_0149	0.77	+0.4
172,119	+		Sama_0149	0.77	-0.1
172,119	+		Sama_0149	0.77	+0.5
172,119	+		Sama_0149	0.77	-1.1
172,119	+		Sama_0149	0.77	-1.6
172,119	+		Sama_0149	0.77	-0.9
172,120	-		Sama_0149	0.77	-2.4
172,120	-		Sama_0149	0.77	+1.6
172,120	-		Sama_0149	0.77	+0.4
172,249	+				+1.3
172,320	+				+0.4
172,320	+				-2.4
172,321	-				-1.1
172,321	-				+0.9
172,336	+				-2.0
172,336	+				-1.2
172,362	+				+0.2
172,362	+				+0.1
172,362	+				-0.9
172,363	-				-1.2
172,363	-				+1.6
172,363	-				-1.2
172,369	+				+0.2
172,370	-				-1.5
172,370	-				+0.4
172,370	-				+0.4
172,389	+				+0.9
172,389	+				+0.8
172,389	+				-0.4
172,389	+				-0.7
172,389	+				+1.6
172,398	+				-0.6
172,416	+				-1.9
172,417	-				-1.5
172,418	+				-1.0
172,418	+				-0.4
172,418	+				-1.1
172,419	-				+0.9
172,419	-				+0.6
172,419	-				-0.7
172,419	-				-0.4
172,419	-				-0.2
172,419	-				+1.1
172,419	-				+0.3
172,464	+				+1.6
172,464	+				-0.6
172,464	+				-0.6
172,464	+				+0.4
172,464	+				+0.5
172,464	+				-0.2
172,465	-				+1.3
172,465	-				-0.2
172,471	+				+0.2
172,494	+				-0.1
172,530	+				+0.1
172,531	-				+0.7
172,576	+				+0.5
172,576	+				-0.0
172,576	+				-1.0
172,576	+				+0.1
172,576	+				-0.6
172,577	-				+0.5
172,577	-				-0.0
172,577	-				-0.0
172,577	-				-1.5
172,593	-				-0.6
172,593	-				+0.0
172,593	-				-0.2
172,593	-				+1.1
172,593	-				-0.5
172,600	-				+0.9
172,612	+				-0.4
172,612	+				+2.0
172,612	+				-2.3
172,612	+				-0.0
172,612	+				+0.2
172,613	-				-0.0
172,613	-				-0.7
172,613	-				-1.7
172,613	-				-0.3
172,613	-				-1.0
172,613	-				+0.5
172,613	-				-0.7
172,613	-				+0.1
172,616	+				+0.1
172,617	-				-0.6
172,617	-				-1.9
172,617	-				-1.5
172,617	-				-0.7
172,617	-				-0.2
172,637	+				-0.5
172,637	+				-0.4
172,638	-				+0.6
172,638	-				-0.4
172,664	+				+0.0
172,693	-				-0.7
172,693	-				+1.5
172,693	-				+0.5
172,697	+				-0.6
172,698	-				-0.2
172,710	-		Sama_0150	0.11	-0.9
172,719	-		Sama_0150	0.12	+0.7
172,805	+		Sama_0150	0.23	+0.7
172,806	-		Sama_0150	0.23	+0.3
172,895	+		Sama_0150	0.35	+2.3
172,925	-		Sama_0150	0.39	+0.6
172,925	-		Sama_0150	0.39	+1.7
172,925	-		Sama_0150	0.39	-0.5
172,925	-		Sama_0150	0.39	+0.7
172,925	-		Sama_0150	0.39	-0.1
172,995	+		Sama_0150	0.47	-0.3
172,995	+		Sama_0150	0.47	+0.1
172,996	-		Sama_0150	0.47	-0.7
172,996	-		Sama_0150	0.47	-0.1
172,996	-		Sama_0150	0.47	+1.1
172,996	-		Sama_0150	0.47	-0.2
172,996	-		Sama_0150	0.47	-0.6
173,004	+		Sama_0150	0.48	+0.1
173,005	-		Sama_0150	0.49	+1.0
173,005	-		Sama_0150	0.49	+0.3
173,032	+		Sama_0150	0.52	+0.5
173,032	+		Sama_0150	0.52	+0.4
173,033	-		Sama_0150	0.52	-0.1
173,033	-		Sama_0150	0.52	+0.4
173,033	-		Sama_0150	0.52	-0.4
173,048	+		Sama_0150	0.54	+1.3
173,048	+		Sama_0150	0.54	+0.3
173,048	+		Sama_0150	0.54	-0.8
173,049	-		Sama_0150	0.54	-0.3
173,049	-		Sama_0150	0.54	-0.5
173,049	-		Sama_0150	0.54	-0.8
173,080	-		Sama_0150	0.58	-1.2
173,127	+		Sama_0150	0.64	-0.3
173,127	+		Sama_0150	0.64	+0.4
173,127	+		Sama_0150	0.64	-0.3
173,128	-		Sama_0150	0.64	+0.6
173,128	-		Sama_0150	0.64	+0.4
173,128	-		Sama_0150	0.64	+0.4
173,128	-		Sama_0150	0.64	+1.5
173,133	+		Sama_0150	0.65	+0.6
173,133	+		Sama_0150	0.65	+0.7
173,133	+		Sama_0150	0.65	-0.7
173,133	+		Sama_0150	0.65	-0.2
173,133	+		Sama_0150	0.65	+0.4
173,133	+		Sama_0150	0.65	+0.4
173,134	-		Sama_0150	0.65	+0.8
173,134	-		Sama_0150	0.65	+1.3
173,134	-		Sama_0150	0.65	-0.1
173,134	-		Sama_0150	0.65	-0.3
173,134	-		Sama_0150	0.65	+0.4
173,134	-		Sama_0150	0.65	-0.4
173,139	+		Sama_0150	0.66	-0.3
173,139	+		Sama_0150	0.66	-0.6
173,139	+		Sama_0150	0.66	-1.4
173,139	+		Sama_0150	0.66	+1.3
173,139	+		Sama_0150	0.66	-0.7
173,139	+		Sama_0150	0.66	+0.2
173,140	-		Sama_0150	0.66	+1.2
173,140	-		Sama_0150	0.66	+0.7
173,140	-		Sama_0150	0.66	+1.1
173,140	-		Sama_0150	0.66	-0.7
173,140	-		Sama_0150	0.66	-2.3
173,140	-		Sama_0150	0.66	-0.2
173,140	-		Sama_0150	0.66	-0.5
173,140	-		Sama_0150	0.66	-0.2
173,175	+		Sama_0150	0.70	+0.8
173,176	-		Sama_0150	0.70	+0.7
173,272	+		Sama_0150	0.82	-1.0
173,272	+		Sama_0150	0.82	-0.7
173,272	+		Sama_0150	0.82	+0.1
173,273	-		Sama_0150	0.82	-0.3
173,273	-		Sama_0150	0.82	-0.1
173,273	-		Sama_0150	0.82	-0.9
173,273	-		Sama_0150	0.82	+3.6
173,273	-		Sama_0150	0.82	-1.5
173,289	+		Sama_0150	0.84	+0.3
173,289	+		Sama_0150	0.84	+0.5
173,289	+		Sama_0150	0.84	-0.8
173,290	-		Sama_0150	0.85	-1.4
173,290	-		Sama_0150	0.85	+1.7
173,304	+		Sama_0150	0.86	+0.1
173,304	+		Sama_0150	0.86	-1.2
173,305	-		Sama_0150	0.86	-1.9
173,306	+		Sama_0150	0.87	-0.6
173,306	+		Sama_0150	0.87	-1.7
173,306	+		Sama_0150	0.87	+1.0
173,306	+		Sama_0150	0.87	+0.8
173,307	-		Sama_0150	0.87	+1.5
173,307	-		Sama_0150	0.87	-0.9
173,357	+				-1.6
173,450	+				-0.1
173,450	+				+0.7
173,450	+				-0.5
173,451	-				-1.4
173,451	-				+1.9
173,451	-				-0.2
173,451	-				-0.1
173,459	-				-1.0
173,459	-				-0.6
173,503	+				+1.2
173,503	+				-0.4
173,503	+				+0.4
173,503	+				-1.3
173,504	-				+2.2
173,504	-				+0.7
173,504	-				-0.5
173,504	-				-1.0
173,504	-				+0.3
173,504	-				-0.3
173,504	-				-0.1
173,612	+				-0.5
173,612	+				-0.2
173,612	+				+0.1
173,612	+				-0.8
173,612	+				+0.8
173,612	+				+1.8
173,613	-				-0.7
173,613	-				+1.1
173,621	+				+1.3
173,621	+				+0.1
173,622	-				-0.5
173,700	+				+0.8
173,701	-				-0.7
173,707	+				+0.2
173,745	+				+1.1
173,746	-				-0.4
173,746	-				+0.0
173,780	+				-0.7
173,780	+				+0.0
173,781	-				+0.1
173,781	-				+1.2
173,815	+				-0.5
173,853	-				-0.1
173,872	+				-0.1
173,929	+				-0.3
173,954	-				-0.2
173,963	+				+0.2
173,963	+				+0.5
173,963	+				+0.9
173,963	+				-1.0
173,963	+				-0.2
173,963	+				+0.1
173,963	+				-0.3
173,963	+				-0.0
173,963	+				-0.1
173,964	-				-0.5
173,964	-				-0.0
173,964	-				+0.2
173,964	-				-0.9
173,964	-				-0.4
173,964	-				+0.1
173,964	-				+0.6
173,965	+				+0.4
173,965	+				-0.1
173,965	+				+0.8
173,965	+				+0.3
173,999	+				+0.1
173,999	+				-1.9
173,999	+				-0.6
174,000	-				-1.2
174,000	-				+0.0
174,000	-				-0.1
174,000	-				+0.9
174,061	+				-0.7
174,062	-				-0.3
174,101	+				+0.2
174,102	-				-0.9
174,110	+				-0.5
174,170	-				-0.4
174,240	+		Sama_0151	0.10	+0.4
174,240	+		Sama_0151	0.10	-0.5
174,241	-		Sama_0151	0.10	+1.1
174,241	-		Sama_0151	0.10	+0.1
174,255	+		Sama_0151	0.11	+0.6
174,255	+		Sama_0151	0.11	-0.4
174,255	+		Sama_0151	0.11	-2.2
174,255	+		Sama_0151	0.11	-0.7
174,256	-		Sama_0151	0.11	-3.2
174,265	+		Sama_0151	0.11	-0.1
174,266	-		Sama_0151	0.11	-1.0
174,266	-		Sama_0151	0.11	+0.5
174,301	+		Sama_0151	0.12	-0.4
174,308	-		Sama_0151	0.12	-0.1
174,390	+		Sama_0151	0.13	-0.6
174,390	+		Sama_0151	0.13	-0.4
174,390	+		Sama_0151	0.13	-2.0
174,391	-		Sama_0151	0.13	+0.5
174,391	-		Sama_0151	0.13	-0.8
174,401	-		Sama_0151	0.14	+0.1
174,401	-		Sama_0151	0.14	-0.0