Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4203

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4202 and Dshi_4203 are separated by 47 nucleotidesDshi_4203 and Dshi_4204 are separated by 66 nucleotidesDshi_4204 and Dshi_4205 overlap by 4 nucleotides Dshi_4202: Dshi_4202 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 48,070 to 50,451 _4202 Dshi_4203: Dshi_4203 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 50,499 to 51,551 _4203 Dshi_4204: Dshi_4204 - hypothetical protein (RefSeq), at 51,618 to 52,199 _4204 Dshi_4205: Dshi_4205 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 52,196 to 53,524 _4205 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1at 49.620 kb on + strand, within Dshi_4202at 49.620 kb on + strand, within Dshi_4202at 49.962 kb on - strand, within Dshi_4202at 49.998 kb on + strand, within Dshi_4202at 50.107 kb on - strand, within Dshi_4202at 50.324 kb on - strandat 50.366 kb on + strandat 50.516 kb on + strandat 50.632 kb on - strand, within Dshi_4203at 50.639 kb on + strand, within Dshi_4203at 50.660 kb on + strand, within Dshi_4203at 50.678 kb on - strand, within Dshi_4203at 50.784 kb on + strand, within Dshi_4203at 50.846 kb on + strand, within Dshi_4203at 50.890 kb on - strand, within Dshi_4203at 50.896 kb on - strand, within Dshi_4203at 50.922 kb on - strand, within Dshi_4203at 51.164 kb on + strand, within Dshi_4203at 51.194 kb on + strand, within Dshi_4203at 51.196 kb on - strand, within Dshi_4203at 51.372 kb on - strand, within Dshi_4203at 51.374 kb on + strand, within Dshi_4203at 51.414 kb on + strand, within Dshi_4203at 52.064 kb on - strand, within Dshi_4204at 52.299 kb on + strandat 52.349 kb on - strand, within Dshi_4205at 52.414 kb on - strand, within Dshi_4205at 52.425 kb on - strand, within Dshi_4205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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49,620 + Dshi_4202 0.65 +1.0
49,620 + Dshi_4202 0.65 +1.0
49,962 - Dshi_4202 0.79 +0.0
49,998 + Dshi_4202 0.81 -1.9
50,107 - Dshi_4202 0.86 -0.1
50,324 - +0.4
50,366 + -1.3
50,516 + +1.0
50,632 - Dshi_4203 0.13 -0.8
50,639 + Dshi_4203 0.13 +1.0
50,660 + Dshi_4203 0.15 +0.8
50,678 - Dshi_4203 0.17 -0.6
50,784 + Dshi_4203 0.27 -1.7
50,846 + Dshi_4203 0.33 +1.0
50,890 - Dshi_4203 0.37 +1.0
50,896 - Dshi_4203 0.38 -2.4
50,922 - Dshi_4203 0.40 +1.0
51,164 + Dshi_4203 0.63 -1.0
51,194 + Dshi_4203 0.66 +1.0
51,196 - Dshi_4203 0.66 +1.0
51,372 - Dshi_4203 0.83 +0.6
51,374 + Dshi_4203 0.83 +0.0
51,414 + Dshi_4203 0.87 +1.0
52,064 - Dshi_4204 0.77 +1.3
52,299 + -0.4
52,349 - Dshi_4205 0.12 -1.3
52,414 - Dshi_4205 0.16 -0.8
52,425 - Dshi_4205 0.17 +0.3

Or see this region's nucleotide sequence