Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3822 and Dshi_3823 are separated by 7 nucleotides Dshi_3823 and Dshi_3824 are separated by 2 nucleotides
Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852
_3822
Dshi_3823: Dshi_3823 - transcriptional regulator, TetR family (RefSeq), at 29,860 to 30,456
_3823
Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769
_3824
Position (kb)
29
30
31 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 28.934 kb on + strand, within Dshi_3822 at 28.939 kb on + strand, within Dshi_3822 at 29.005 kb on - strand, within Dshi_3822 at 29.031 kb on - strand, within Dshi_3822 at 29.088 kb on - strand, within Dshi_3822 at 29.091 kb on + strand, within Dshi_3822 at 29.171 kb on - strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.236 kb on + strand, within Dshi_3822 at 29.420 kb on - strand, within Dshi_3822 at 29.565 kb on + strand, within Dshi_3822 at 29.617 kb on + strand, within Dshi_3822 at 29.666 kb on - strand, within Dshi_3822 at 29.710 kb on - strand, within Dshi_3822 at 29.739 kb on + strand, within Dshi_3822 at 29.815 kb on - strand at 30.060 kb on - strand, within Dshi_3823 at 30.065 kb on - strand, within Dshi_3823 at 30.156 kb on + strand, within Dshi_3823 at 30.171 kb on + strand, within Dshi_3823 at 30.179 kb on + strand, within Dshi_3823 at 30.179 kb on - strand, within Dshi_3823 at 30.212 kb on + strand, within Dshi_3823 at 30.259 kb on - strand, within Dshi_3823 at 30.263 kb on + strand, within Dshi_3823 at 30.493 kb on + strand at 30.493 kb on + strand at 30.559 kb on - strand at 30.569 kb on - strand at 30.719 kb on + strand, within Dshi_3824 at 30.740 kb on + strand, within Dshi_3824 at 30.825 kb on + strand, within Dshi_3824 at 30.895 kb on - strand, within Dshi_3824 at 30.991 kb on + strand, within Dshi_3824 at 31.058 kb on - strand, within Dshi_3824 at 31.113 kb on - strand, within Dshi_3824 at 31.125 kb on - strand, within Dshi_3824 at 31.163 kb on - strand, within Dshi_3824 at 31.213 kb on - strand, within Dshi_3824 at 31.233 kb on + strand, within Dshi_3824 at 31.340 kb on + strand, within Dshi_3824 at 31.376 kb on + strand, within Dshi_3824 at 31.446 kb on + strand, within Dshi_3824
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 28,934 + Dshi_3822 0.14 -0.3 28,939 + Dshi_3822 0.15 -0.5 29,005 - Dshi_3822 0.21 -0.8 29,031 - Dshi_3822 0.23 +0.5 29,088 - Dshi_3822 0.29 -0.1 29,091 + Dshi_3822 0.29 -4.0 29,171 - Dshi_3822 0.36 +0.5 29,210 + Dshi_3822 0.40 +2.1 29,210 + Dshi_3822 0.40 -0.3 29,218 - Dshi_3822 0.41 +0.1 29,218 - Dshi_3822 0.41 +2.8 29,236 + Dshi_3822 0.42 -0.9 29,420 - Dshi_3822 0.60 +0.5 29,565 + Dshi_3822 0.73 +1.3 29,617 + Dshi_3822 0.78 +1.9 29,666 - Dshi_3822 0.83 -2.1 29,710 - Dshi_3822 0.87 -2.1 29,739 + Dshi_3822 0.89 -3.3 29,815 - -2.2 30,060 - Dshi_3823 0.34 -0.5 30,065 - Dshi_3823 0.34 -2.3 30,156 + Dshi_3823 0.50 -2.1 30,171 + Dshi_3823 0.52 -0.5 30,179 + Dshi_3823 0.53 +2.1 30,179 - Dshi_3823 0.53 +2.7 30,212 + Dshi_3823 0.59 +0.2 30,259 - Dshi_3823 0.67 -1.4 30,263 + Dshi_3823 0.68 -2.1 30,493 + +0.5 30,493 + -0.0 30,559 - -0.5 30,569 - -2.5 30,719 + Dshi_3824 0.20 -0.5 30,740 + Dshi_3824 0.21 -0.6 30,825 + Dshi_3824 0.28 -0.2 30,895 - Dshi_3824 0.33 -1.1 30,991 + Dshi_3824 0.41 -3.5 31,058 - Dshi_3824 0.46 -1.9 31,113 - Dshi_3824 0.50 +0.9 31,125 - Dshi_3824 0.51 -3.3 31,163 - Dshi_3824 0.54 -1.7 31,213 - Dshi_3824 0.58 +1.5 31,233 + Dshi_3824 0.59 -2.0 31,340 + Dshi_3824 0.67 -0.5 31,376 + Dshi_3824 0.70 -1.7 31,446 + Dshi_3824 0.75 +0.3
Or see this region's nucleotide sequence