Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3640

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3637 and Dshi_3638 are separated by 43 nucleotidesDshi_3638 and Dshi_3639 overlap by 4 nucleotidesDshi_3639 and Dshi_3640 overlap by 8 nucleotidesDshi_3640 and Dshi_3641 overlap by 11 nucleotides Dshi_3637: Dshi_3637 - hypothetical protein (RefSeq), at 38,780 to 39,133 _3637 Dshi_3638: Dshi_3638 - Lytic transglycosylase catalytic (RefSeq), at 39,177 to 39,797 _3638 Dshi_3639: Dshi_3639 - Conjugal transfer protein TrbC (RefSeq), at 39,794 to 40,087 _3639 Dshi_3640: Dshi_3640 - type IV secretory pathway VirB3 family protein (RefSeq), at 40,080 to 40,358 _3640 Dshi_3641: Dshi_3641 - CagE TrbE VirB component of type IV transporter system (RefSeq), at 40,348 to 42,723 _3641 Position (kb) 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 39.116 kb on - strandat 39.188 kb on - strandat 39.188 kb on - strandat 39.194 kb on - strandat 39.227 kb on + strandat 39.228 kb on - strandat 39.240 kb on - strand, within Dshi_3638at 39.256 kb on + strand, within Dshi_3638at 39.274 kb on - strand, within Dshi_3638at 39.308 kb on + strand, within Dshi_3638at 39.312 kb on + strand, within Dshi_3638at 39.320 kb on - strand, within Dshi_3638at 39.334 kb on + strand, within Dshi_3638at 39.345 kb on - strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.368 kb on - strand, within Dshi_3638at 39.373 kb on - strand, within Dshi_3638at 39.373 kb on - strand, within Dshi_3638at 39.380 kb on + strand, within Dshi_3638at 39.386 kb on - strand, within Dshi_3638at 39.395 kb on + strand, within Dshi_3638at 39.402 kb on + strand, within Dshi_3638at 39.402 kb on + strand, within Dshi_3638at 39.407 kb on + strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.430 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.444 kb on - strand, within Dshi_3638at 39.460 kb on + strand, within Dshi_3638at 39.473 kb on - strand, within Dshi_3638at 39.494 kb on - strand, within Dshi_3638at 39.507 kb on - strand, within Dshi_3638at 39.521 kb on - strand, within Dshi_3638at 39.554 kb on + strand, within Dshi_3638at 39.556 kb on - strand, within Dshi_3638at 39.556 kb on - strand, within Dshi_3638at 39.585 kb on - strand, within Dshi_3638at 39.600 kb on - strand, within Dshi_3638at 39.602 kb on - strand, within Dshi_3638at 39.668 kb on - strand, within Dshi_3638at 39.682 kb on + strand, within Dshi_3638at 39.697 kb on - strand, within Dshi_3638at 39.715 kb on + strand, within Dshi_3638at 39.716 kb on - strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.742 kb on + strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.748 kb on - strandat 39.779 kb on - strandat 39.811 kb on + strandat 39.848 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.870 kb on + strand, within Dshi_3639at 39.882 kb on + strand, within Dshi_3639at 39.887 kb on + strand, within Dshi_3639at 39.887 kb on + strand, within Dshi_3639at 39.930 kb on + strand, within Dshi_3639at 39.941 kb on + strand, within Dshi_3639at 39.971 kb on + strand, within Dshi_3639at 39.993 kb on + strand, within Dshi_3639at 40.030 kb on - strand, within Dshi_3639at 40.030 kb on - strand, within Dshi_3639at 40.229 kb on + strand, within Dshi_3640at 40.229 kb on + strand, within Dshi_3640at 40.229 kb on + strand, within Dshi_3640at 40.229 kb on + strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.288 kb on + strand, within Dshi_3640at 40.296 kb on - strand, within Dshi_3640at 40.335 kb on + strandat 40.345 kb on + strandat 40.345 kb on + strandat 40.346 kb on - strandat 40.353 kb on - strandat 40.353 kb on - strandat 40.353 kb on - strandat 40.353 kb on - strandat 40.399 kb on - strandat 40.448 kb on - strandat 40.471 kb on + strandat 40.492 kb on + strandat 40.516 kb on + strandat 40.532 kb on + strandat 40.551 kb on + strandat 40.598 kb on - strand, within Dshi_3641at 40.617 kb on + strand, within Dshi_3641at 40.634 kb on - strand, within Dshi_3641at 40.634 kb on - strand, within Dshi_3641at 40.648 kb on - strand, within Dshi_3641at 40.655 kb on + strand, within Dshi_3641at 40.690 kb on - strand, within Dshi_3641at 40.690 kb on - strand, within Dshi_3641at 40.690 kb on - strand, within Dshi_3641at 40.700 kb on - strand, within Dshi_3641at 40.758 kb on - strand, within Dshi_3641at 40.812 kb on + strand, within Dshi_3641at 40.978 kb on + strand, within Dshi_3641at 40.983 kb on + strand, within Dshi_3641at 41.019 kb on - strand, within Dshi_3641at 41.042 kb on + strand, within Dshi_3641at 41.085 kb on + strand, within Dshi_3641at 41.169 kb on - strand, within Dshi_3641at 41.174 kb on + strand, within Dshi_3641at 41.178 kb on - strand, within Dshi_3641at 41.182 kb on - strand, within Dshi_3641at 41.204 kb on - strand, within Dshi_3641at 41.280 kb on - strand, within Dshi_3641at 41.281 kb on - strand, within Dshi_3641at 41.315 kb on + strand, within Dshi_3641

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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39,116 - -1.2
39,188 - -1.8
39,188 - -0.9
39,194 - +0.3
39,227 + +0.3
39,228 - -0.2
39,240 - Dshi_3638 0.10 -0.4
39,256 + Dshi_3638 0.13 +1.6
39,274 - Dshi_3638 0.16 -1.1
39,308 + Dshi_3638 0.21 +0.2
39,312 + Dshi_3638 0.22 -0.9
39,320 - Dshi_3638 0.23 +1.1
39,334 + Dshi_3638 0.25 -0.2
39,345 - Dshi_3638 0.27 -0.0
39,360 + Dshi_3638 0.29 -0.1
39,360 + Dshi_3638 0.29 -0.6
39,360 + Dshi_3638 0.29 +1.6
39,368 - Dshi_3638 0.31 -0.5
39,373 - Dshi_3638 0.32 -0.8
39,373 - Dshi_3638 0.32 +0.1
39,380 + Dshi_3638 0.33 +1.6
39,386 - Dshi_3638 0.34 +0.0
39,395 + Dshi_3638 0.35 +0.5
39,402 + Dshi_3638 0.36 -0.7
39,402 + Dshi_3638 0.36 -1.5
39,407 + Dshi_3638 0.37 -0.8
39,410 - Dshi_3638 0.38 +0.9
39,410 - Dshi_3638 0.38 -0.0
39,410 - Dshi_3638 0.38 +0.7
39,426 + Dshi_3638 0.40 +0.2
39,426 + Dshi_3638 0.40 -0.0
39,426 + Dshi_3638 0.40 -1.0
39,430 - Dshi_3638 0.41 +1.3
39,434 - Dshi_3638 0.41 -0.8
39,434 - Dshi_3638 0.41 +0.2
39,434 - Dshi_3638 0.41 +2.1
39,434 - Dshi_3638 0.41 -0.9
39,434 - Dshi_3638 0.41 +2.6
39,434 - Dshi_3638 0.41 +0.5
39,434 - Dshi_3638 0.41 +0.1
39,434 - Dshi_3638 0.41 -0.2
39,434 - Dshi_3638 0.41 -0.7
39,444 - Dshi_3638 0.43 +0.2
39,460 + Dshi_3638 0.46 -0.4
39,473 - Dshi_3638 0.48 -0.7
39,494 - Dshi_3638 0.51 -2.8
39,507 - Dshi_3638 0.53 +0.5
39,521 - Dshi_3638 0.55 -1.3
39,554 + Dshi_3638 0.61 -0.8
39,556 - Dshi_3638 0.61 -0.7
39,556 - Dshi_3638 0.61 -0.7
39,585 - Dshi_3638 0.66 -1.4
39,600 - Dshi_3638 0.68 +2.0
39,602 - Dshi_3638 0.68 +0.3
39,668 - Dshi_3638 0.79 +2.9
39,682 + Dshi_3638 0.81 +0.2
39,697 - Dshi_3638 0.84 +0.1
39,715 + Dshi_3638 0.87 -1.3
39,716 - Dshi_3638 0.87 +2.8
39,735 + Dshi_3638 0.90 +1.3
39,735 + Dshi_3638 0.90 -1.6
39,735 + Dshi_3638 0.90 +0.4
39,742 + -0.3
39,743 - -0.2
39,743 - -0.9
39,743 - -0.9
39,743 - -1.1
39,743 - -1.0
39,748 - -0.3
39,779 - -0.7
39,811 + +3.3
39,848 + Dshi_3639 0.18 -0.7
39,858 + Dshi_3639 0.22 -0.2
39,858 + Dshi_3639 0.22 -1.8
39,858 + Dshi_3639 0.22 -0.2
39,866 - Dshi_3639 0.24 +2.6
39,866 - Dshi_3639 0.24 -0.8
39,866 - Dshi_3639 0.24 -0.2
39,866 - Dshi_3639 0.24 +1.2
39,866 - Dshi_3639 0.24 -0.2
39,870 + Dshi_3639 0.26 +0.9
39,882 + Dshi_3639 0.30 +0.7
39,887 + Dshi_3639 0.32 -0.6
39,887 + Dshi_3639 0.32 +0.2
39,930 + Dshi_3639 0.46 -0.9
39,941 + Dshi_3639 0.50 -0.3
39,971 + Dshi_3639 0.60 +1.9
39,993 + Dshi_3639 0.68 +1.8
40,030 - Dshi_3639 0.80 -0.5
40,030 - Dshi_3639 0.80 -1.3
40,229 + Dshi_3640 0.53 -1.5
40,229 + Dshi_3640 0.53 -0.6
40,229 + Dshi_3640 0.53 +0.2
40,229 + Dshi_3640 0.53 -0.2
40,237 - Dshi_3640 0.56 +1.4
40,237 - Dshi_3640 0.56 +0.6
40,237 - Dshi_3640 0.56 +0.0
40,237 - Dshi_3640 0.56 +1.3
40,288 + Dshi_3640 0.75 +0.2
40,296 - Dshi_3640 0.77 +3.5
40,335 + -1.9
40,345 + +0.9
40,345 + -0.1
40,346 - -0.6
40,353 - -0.3
40,353 - -1.4
40,353 - +1.2
40,353 - +0.6
40,399 - -1.4
40,448 - -0.1
40,471 + -0.2
40,492 + -0.2
40,516 + -0.5
40,532 + -1.3
40,551 + -0.6
40,598 - Dshi_3641 0.11 +0.1
40,617 + Dshi_3641 0.11 -0.5
40,634 - Dshi_3641 0.12 +1.4
40,634 - Dshi_3641 0.12 +0.6
40,648 - Dshi_3641 0.13 +0.9
40,655 + Dshi_3641 0.13 +2.4
40,690 - Dshi_3641 0.14 -4.1
40,690 - Dshi_3641 0.14 -1.1
40,690 - Dshi_3641 0.14 -1.3
40,700 - Dshi_3641 0.15 +0.2
40,758 - Dshi_3641 0.17 -1.2
40,812 + Dshi_3641 0.20 -0.2
40,978 + Dshi_3641 0.27 -0.3
40,983 + Dshi_3641 0.27 +1.1
41,019 - Dshi_3641 0.28 +0.3
41,042 + Dshi_3641 0.29 -1.5
41,085 + Dshi_3641 0.31 +0.2
41,169 - Dshi_3641 0.35 +0.1
41,174 + Dshi_3641 0.35 +1.1
41,178 - Dshi_3641 0.35 -0.0
41,182 - Dshi_3641 0.35 +0.2
41,204 - Dshi_3641 0.36 -0.8
41,280 - Dshi_3641 0.39 -0.5
41,281 - Dshi_3641 0.39 -0.7
41,315 + Dshi_3641 0.41 +0.3

Or see this region's nucleotide sequence