Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3637

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3635 and Dshi_3636 are separated by 124 nucleotidesDshi_3636 and Dshi_3637 are separated by 168 nucleotidesDshi_3637 and Dshi_3638 are separated by 43 nucleotidesDshi_3638 and Dshi_3639 overlap by 4 nucleotidesDshi_3639 and Dshi_3640 overlap by 8 nucleotides Dshi_3635: Dshi_3635 - transcriptional regulator, XRE family (RefSeq), at 37,936 to 38,193 _3635 Dshi_3636: Dshi_3636 - hypothetical protein (RefSeq), at 38,318 to 38,611 _3636 Dshi_3637: Dshi_3637 - hypothetical protein (RefSeq), at 38,780 to 39,133 _3637 Dshi_3638: Dshi_3638 - Lytic transglycosylase catalytic (RefSeq), at 39,177 to 39,797 _3638 Dshi_3639: Dshi_3639 - Conjugal transfer protein TrbC (RefSeq), at 39,794 to 40,087 _3639 Dshi_3640: Dshi_3640 - type IV secretory pathway VirB3 family protein (RefSeq), at 40,080 to 40,358 _3640 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 37.786 kb on - strandat 37.786 kb on - strandat 37.786 kb on - strandat 37.794 kb on - strandat 37.811 kb on + strandat 37.811 kb on + strandat 37.811 kb on + strandat 37.819 kb on - strandat 37.819 kb on - strandat 37.819 kb on - strandat 37.821 kb on - strandat 37.821 kb on - strandat 37.826 kb on + strandat 37.826 kb on + strandat 37.826 kb on + strandat 37.829 kb on - strandat 37.829 kb on - strandat 37.834 kb on - strandat 37.834 kb on - strandat 37.834 kb on - strandat 37.879 kb on + strandat 37.885 kb on + strandat 37.907 kb on + strandat 37.972 kb on - strand, within Dshi_3635at 37.972 kb on - strand, within Dshi_3635at 37.982 kb on + strand, within Dshi_3635at 37.990 kb on - strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 37.992 kb on + strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.000 kb on - strand, within Dshi_3635at 38.019 kb on - strand, within Dshi_3635at 38.092 kb on - strand, within Dshi_3635at 38.093 kb on - strand, within Dshi_3635at 38.107 kb on + strand, within Dshi_3635at 38.107 kb on + strand, within Dshi_3635at 38.113 kb on + strand, within Dshi_3635at 38.115 kb on - strand, within Dshi_3635at 38.115 kb on - strand, within Dshi_3635at 38.118 kb on + strand, within Dshi_3635at 38.145 kb on + strand, within Dshi_3635at 38.148 kb on - strand, within Dshi_3635at 38.153 kb on - strand, within Dshi_3635at 38.167 kb on - strand, within Dshi_3635at 38.277 kb on + strandat 38.286 kb on + strandat 38.288 kb on + strandat 38.294 kb on + strandat 38.294 kb on + strandat 38.296 kb on - strandat 38.298 kb on + strandat 38.302 kb on - strandat 38.302 kb on - strandat 38.345 kb on + strandat 38.358 kb on - strand, within Dshi_3636at 38.362 kb on + strand, within Dshi_3636at 38.364 kb on + strand, within Dshi_3636at 38.371 kb on + strand, within Dshi_3636at 38.380 kb on + strand, within Dshi_3636at 38.406 kb on - strand, within Dshi_3636at 38.406 kb on - strand, within Dshi_3636at 38.406 kb on - strand, within Dshi_3636at 38.417 kb on + strand, within Dshi_3636at 38.430 kb on - strand, within Dshi_3636at 38.432 kb on + strand, within Dshi_3636at 38.432 kb on + strand, within Dshi_3636at 38.432 kb on + strand, within Dshi_3636at 38.432 kb on + strand, within Dshi_3636at 38.432 kb on + strand, within Dshi_3636at 38.440 kb on + strand, within Dshi_3636at 38.456 kb on + strand, within Dshi_3636at 38.472 kb on - strand, within Dshi_3636at 38.474 kb on - strand, within Dshi_3636at 38.520 kb on + strand, within Dshi_3636at 38.537 kb on + strand, within Dshi_3636at 38.541 kb on + strand, within Dshi_3636at 38.570 kb on + strand, within Dshi_3636at 38.572 kb on - strand, within Dshi_3636at 38.588 kb on - strandat 38.590 kb on - strandat 38.590 kb on - strandat 38.613 kb on + strandat 38.615 kb on + strandat 38.623 kb on - strandat 38.636 kb on + strandat 38.644 kb on - strandat 38.651 kb on + strandat 38.651 kb on + strandat 38.741 kb on + strandat 38.741 kb on + strandat 38.741 kb on + strandat 38.783 kb on - strandat 38.785 kb on - strandat 38.913 kb on + strand, within Dshi_3637at 39.011 kb on + strand, within Dshi_3637at 39.028 kb on + strand, within Dshi_3637at 39.042 kb on + strand, within Dshi_3637at 39.047 kb on + strand, within Dshi_3637at 39.069 kb on + strand, within Dshi_3637at 39.077 kb on - strand, within Dshi_3637at 39.116 kb on - strandat 39.188 kb on - strandat 39.188 kb on - strandat 39.194 kb on - strandat 39.227 kb on + strandat 39.228 kb on - strandat 39.240 kb on - strand, within Dshi_3638at 39.256 kb on + strand, within Dshi_3638at 39.274 kb on - strand, within Dshi_3638at 39.308 kb on + strand, within Dshi_3638at 39.312 kb on + strand, within Dshi_3638at 39.320 kb on - strand, within Dshi_3638at 39.334 kb on + strand, within Dshi_3638at 39.345 kb on - strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.368 kb on - strand, within Dshi_3638at 39.373 kb on - strand, within Dshi_3638at 39.373 kb on - strand, within Dshi_3638at 39.380 kb on + strand, within Dshi_3638at 39.386 kb on - strand, within Dshi_3638at 39.395 kb on + strand, within Dshi_3638at 39.402 kb on + strand, within Dshi_3638at 39.402 kb on + strand, within Dshi_3638at 39.407 kb on + strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.430 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.444 kb on - strand, within Dshi_3638at 39.460 kb on + strand, within Dshi_3638at 39.473 kb on - strand, within Dshi_3638at 39.494 kb on - strand, within Dshi_3638at 39.507 kb on - strand, within Dshi_3638at 39.521 kb on - strand, within Dshi_3638at 39.554 kb on + strand, within Dshi_3638at 39.556 kb on - strand, within Dshi_3638at 39.556 kb on - strand, within Dshi_3638at 39.585 kb on - strand, within Dshi_3638at 39.600 kb on - strand, within Dshi_3638at 39.602 kb on - strand, within Dshi_3638at 39.668 kb on - strand, within Dshi_3638at 39.682 kb on + strand, within Dshi_3638at 39.697 kb on - strand, within Dshi_3638at 39.715 kb on + strand, within Dshi_3638at 39.716 kb on - strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.742 kb on + strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.748 kb on - strandat 39.779 kb on - strandat 39.811 kb on + strandat 39.848 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.870 kb on + strand, within Dshi_3639at 39.882 kb on + strand, within Dshi_3639at 39.887 kb on + strand, within Dshi_3639at 39.887 kb on + strand, within Dshi_3639at 39.930 kb on + strand, within Dshi_3639at 39.941 kb on + strand, within Dshi_3639at 39.971 kb on + strand, within Dshi_3639at 39.993 kb on + strand, within Dshi_3639at 40.030 kb on - strand, within Dshi_3639at 40.030 kb on - strand, within Dshi_3639

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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37,786 - -0.0
37,786 - -0.7
37,786 - +1.1
37,794 - -0.3
37,811 + +0.3
37,811 + -0.5
37,811 + +1.2
37,819 - -1.3
37,819 - +1.8
37,819 - -0.6
37,821 - +0.6
37,821 - -3.1
37,826 + -1.8
37,826 + -0.4
37,826 + -0.1
37,829 - +1.2
37,829 - -0.5
37,834 - -2.4
37,834 - -0.6
37,834 - -0.4
37,879 + -0.3
37,885 + -1.4
37,907 + +0.1
37,972 - Dshi_3635 0.14 +1.4
37,972 - Dshi_3635 0.14 +3.2
37,982 + Dshi_3635 0.18 +0.5
37,990 - Dshi_3635 0.21 -1.9
37,992 + Dshi_3635 0.22 +0.3
37,992 + Dshi_3635 0.22 -2.6
37,992 + Dshi_3635 0.22 +0.4
37,992 + Dshi_3635 0.22 -1.1
37,992 + Dshi_3635 0.22 +2.4
37,992 + Dshi_3635 0.22 +1.0
37,992 + Dshi_3635 0.22 +0.1
37,992 + Dshi_3635 0.22 +2.1
37,992 + Dshi_3635 0.22 -0.4
37,992 + Dshi_3635 0.22 +0.1
38,000 - Dshi_3635 0.25 +0.8
38,000 - Dshi_3635 0.25 +0.8
38,000 - Dshi_3635 0.25 -0.3
38,000 - Dshi_3635 0.25 +0.5
38,000 - Dshi_3635 0.25 -1.0
38,000 - Dshi_3635 0.25 -0.0
38,000 - Dshi_3635 0.25 -0.3
38,019 - Dshi_3635 0.32 -0.4
38,092 - Dshi_3635 0.60 -0.8
38,093 - Dshi_3635 0.61 -0.2
38,107 + Dshi_3635 0.66 -1.2
38,107 + Dshi_3635 0.66 -0.3
38,113 + Dshi_3635 0.69 -0.6
38,115 - Dshi_3635 0.69 +1.0
38,115 - Dshi_3635 0.69 +0.4
38,118 + Dshi_3635 0.71 -1.3
38,145 + Dshi_3635 0.81 -1.0
38,148 - Dshi_3635 0.82 -0.7
38,153 - Dshi_3635 0.84 -0.4
38,167 - Dshi_3635 0.90 -1.2
38,277 + +0.5
38,286 + -0.2
38,288 + +0.2
38,294 + +0.1
38,294 + +3.2
38,296 - +0.7
38,298 + +2.1
38,302 - -1.3
38,302 - -1.5
38,345 + +1.9
38,358 - Dshi_3636 0.14 -0.2
38,362 + Dshi_3636 0.15 +0.4
38,364 + Dshi_3636 0.16 +0.3
38,371 + Dshi_3636 0.18 -0.7
38,380 + Dshi_3636 0.21 -1.1
38,406 - Dshi_3636 0.30 -0.9
38,406 - Dshi_3636 0.30 -2.2
38,406 - Dshi_3636 0.30 +2.1
38,417 + Dshi_3636 0.34 -0.5
38,430 - Dshi_3636 0.38 +1.8
38,432 + Dshi_3636 0.39 +0.7
38,432 + Dshi_3636 0.39 +0.7
38,432 + Dshi_3636 0.39 +1.6
38,432 + Dshi_3636 0.39 -1.3
38,432 + Dshi_3636 0.39 -0.9
38,440 + Dshi_3636 0.41 -0.2
38,456 + Dshi_3636 0.47 -1.2
38,472 - Dshi_3636 0.52 -0.7
38,474 - Dshi_3636 0.53 -0.7
38,520 + Dshi_3636 0.69 -0.0
38,537 + Dshi_3636 0.74 -1.9
38,541 + Dshi_3636 0.76 -0.1
38,570 + Dshi_3636 0.86 -0.5
38,572 - Dshi_3636 0.86 +2.1
38,588 - +0.3
38,590 - -0.8
38,590 - -0.6
38,613 + +1.3
38,615 + -0.7
38,623 - +0.3
38,636 + +0.7
38,644 - +0.3
38,651 + -0.4
38,651 + +0.3
38,741 + -0.6
38,741 + +0.8
38,741 + -0.2
38,783 - +0.8
38,785 - +0.3
38,913 + Dshi_3637 0.38 +1.2
39,011 + Dshi_3637 0.65 +1.5
39,028 + Dshi_3637 0.70 +1.0
39,042 + Dshi_3637 0.74 +2.3
39,047 + Dshi_3637 0.75 +2.4
39,069 + Dshi_3637 0.82 +1.4
39,077 - Dshi_3637 0.84 +0.1
39,116 - -1.2
39,188 - -1.8
39,188 - -0.9
39,194 - +0.3
39,227 + +0.3
39,228 - -0.2
39,240 - Dshi_3638 0.10 -0.4
39,256 + Dshi_3638 0.13 +1.6
39,274 - Dshi_3638 0.16 -1.1
39,308 + Dshi_3638 0.21 +0.2
39,312 + Dshi_3638 0.22 -0.9
39,320 - Dshi_3638 0.23 +1.1
39,334 + Dshi_3638 0.25 -0.2
39,345 - Dshi_3638 0.27 -0.0
39,360 + Dshi_3638 0.29 -0.1
39,360 + Dshi_3638 0.29 -0.6
39,360 + Dshi_3638 0.29 +1.6
39,368 - Dshi_3638 0.31 -0.5
39,373 - Dshi_3638 0.32 -0.8
39,373 - Dshi_3638 0.32 +0.1
39,380 + Dshi_3638 0.33 +1.6
39,386 - Dshi_3638 0.34 +0.0
39,395 + Dshi_3638 0.35 +0.5
39,402 + Dshi_3638 0.36 -0.7
39,402 + Dshi_3638 0.36 -1.5
39,407 + Dshi_3638 0.37 -0.8
39,410 - Dshi_3638 0.38 +0.9
39,410 - Dshi_3638 0.38 -0.0
39,410 - Dshi_3638 0.38 +0.7
39,426 + Dshi_3638 0.40 +0.2
39,426 + Dshi_3638 0.40 -0.0
39,426 + Dshi_3638 0.40 -1.0
39,430 - Dshi_3638 0.41 +1.3
39,434 - Dshi_3638 0.41 -0.8
39,434 - Dshi_3638 0.41 +0.2
39,434 - Dshi_3638 0.41 +2.1
39,434 - Dshi_3638 0.41 -0.9
39,434 - Dshi_3638 0.41 +2.6
39,434 - Dshi_3638 0.41 +0.5
39,434 - Dshi_3638 0.41 +0.1
39,434 - Dshi_3638 0.41 -0.2
39,434 - Dshi_3638 0.41 -0.7
39,444 - Dshi_3638 0.43 +0.2
39,460 + Dshi_3638 0.46 -0.4
39,473 - Dshi_3638 0.48 -0.7
39,494 - Dshi_3638 0.51 -2.8
39,507 - Dshi_3638 0.53 +0.5
39,521 - Dshi_3638 0.55 -1.3
39,554 + Dshi_3638 0.61 -0.8
39,556 - Dshi_3638 0.61 -0.7
39,556 - Dshi_3638 0.61 -0.7
39,585 - Dshi_3638 0.66 -1.4
39,600 - Dshi_3638 0.68 +2.0
39,602 - Dshi_3638 0.68 +0.3
39,668 - Dshi_3638 0.79 +2.9
39,682 + Dshi_3638 0.81 +0.2
39,697 - Dshi_3638 0.84 +0.1
39,715 + Dshi_3638 0.87 -1.3
39,716 - Dshi_3638 0.87 +2.8
39,735 + Dshi_3638 0.90 +1.3
39,735 + Dshi_3638 0.90 -1.6
39,735 + Dshi_3638 0.90 +0.4
39,742 + -0.3
39,743 - -0.2
39,743 - -0.9
39,743 - -0.9
39,743 - -1.1
39,743 - -1.0
39,748 - -0.3
39,779 - -0.7
39,811 + +3.3
39,848 + Dshi_3639 0.18 -0.7
39,858 + Dshi_3639 0.22 -0.2
39,858 + Dshi_3639 0.22 -1.8
39,858 + Dshi_3639 0.22 -0.2
39,866 - Dshi_3639 0.24 +2.6
39,866 - Dshi_3639 0.24 -0.8
39,866 - Dshi_3639 0.24 -0.2
39,866 - Dshi_3639 0.24 +1.2
39,866 - Dshi_3639 0.24 -0.2
39,870 + Dshi_3639 0.26 +0.9
39,882 + Dshi_3639 0.30 +0.7
39,887 + Dshi_3639 0.32 -0.6
39,887 + Dshi_3639 0.32 +0.2
39,930 + Dshi_3639 0.46 -0.9
39,941 + Dshi_3639 0.50 -0.3
39,971 + Dshi_3639 0.60 +1.9
39,993 + Dshi_3639 0.68 +1.8
40,030 - Dshi_3639 0.80 -0.5
40,030 - Dshi_3639 0.80 -1.3

Or see this region's nucleotide sequence