Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3147

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3146 and Dshi_3147 are separated by 34 nucleotidesDshi_3147 and Dshi_3148 are separated by 2 nucleotidesDshi_3148 and Dshi_3149 overlap by 4 nucleotides Dshi_3146: Dshi_3146 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit (RefSeq), at 3,312,960 to 3,313,922 _3146 Dshi_3147: Dshi_3147 - protein of unknown function DUF306 Meta and HslJ (RefSeq), at 3,313,957 to 3,314,697 _3147 Dshi_3148: Dshi_3148 - hypothetical protein (RefSeq), at 3,314,700 to 3,315,176 _3148 Dshi_3149: Dshi_3149 - peptidase M15D vanX D-ala-D-ala dipeptidase (RefSeq), at 3,315,173 to 3,315,985 _3149 Position (kb) 3313 3314 3315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3314.091 kb on + strand, within Dshi_3147at 3314.091 kb on - strand, within Dshi_3147at 3314.228 kb on + strand, within Dshi_3147at 3314.250 kb on + strand, within Dshi_3147at 3314.341 kb on - strand, within Dshi_3147at 3314.418 kb on - strand, within Dshi_3147at 3314.982 kb on + strand, within Dshi_3148at 3315.075 kb on - strand, within Dshi_3148at 3315.081 kb on + strand, within Dshi_3148at 3315.186 kb on + strandat 3315.191 kb on + strandat 3315.227 kb on + strandat 3315.294 kb on + strand, within Dshi_3149at 3315.375 kb on + strand, within Dshi_3149at 3315.385 kb on + strand, within Dshi_3149at 3315.424 kb on - strand, within Dshi_3149at 3315.487 kb on - strand, within Dshi_3149at 3315.687 kb on + strand, within Dshi_3149

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,314,091 + Dshi_3147 0.18 -2.7
3,314,091 - Dshi_3147 0.18 +0.4
3,314,228 + Dshi_3147 0.37 -2.2
3,314,250 + Dshi_3147 0.40 -1.1
3,314,341 - Dshi_3147 0.52 -0.9
3,314,418 - Dshi_3147 0.62 +2.9
3,314,982 + Dshi_3148 0.59 +0.6
3,315,075 - Dshi_3148 0.79 -1.4
3,315,081 + Dshi_3148 0.80 +0.1
3,315,186 + -0.4
3,315,191 + -1.9
3,315,227 + -0.6
3,315,294 + Dshi_3149 0.15 -1.0
3,315,375 + Dshi_3149 0.25 -1.0
3,315,385 + Dshi_3149 0.26 +1.8
3,315,424 - Dshi_3149 0.31 -2.9
3,315,487 - Dshi_3149 0.39 -2.6
3,315,687 + Dshi_3149 0.63 -1.1

Or see this region's nucleotide sequence