Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3085

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3084 and Dshi_3085 are separated by 125 nucleotidesDshi_3085 and Dshi_3086 overlap by 1 nucleotides Dshi_3084: Dshi_3084 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 3,253,947 to 3,254,924 _3084 Dshi_3085: Dshi_3085 - acyl-CoA dehydrogenase domain protein (RefSeq), at 3,255,050 to 3,256,765 _3085 Dshi_3086: Dshi_3086 - beta-lactamase domain protein (RefSeq), at 3,256,765 to 3,257,814 _3086 Position (kb) 3255 3256 3257Strain fitness (log2 ratio) -2 -1 0 1 2at 3255.063 kb on - strandat 3255.330 kb on - strand, within Dshi_3085at 3255.366 kb on - strand, within Dshi_3085at 3255.413 kb on - strand, within Dshi_3085at 3255.427 kb on + strand, within Dshi_3085at 3255.458 kb on - strand, within Dshi_3085at 3255.886 kb on + strand, within Dshi_3085at 3255.899 kb on + strand, within Dshi_3085at 3256.010 kb on - strand, within Dshi_3085at 3256.025 kb on - strand, within Dshi_3085at 3256.152 kb on - strand, within Dshi_3085at 3256.263 kb on - strand, within Dshi_3085at 3256.330 kb on + strand, within Dshi_3085at 3256.711 kb on - strandat 3256.797 kb on + strandat 3256.872 kb on - strand, within Dshi_3086at 3256.876 kb on + strand, within Dshi_3086at 3256.876 kb on + strand, within Dshi_3086at 3256.935 kb on - strand, within Dshi_3086at 3256.974 kb on - strand, within Dshi_3086at 3257.064 kb on + strand, within Dshi_3086at 3257.089 kb on - strand, within Dshi_3086at 3257.459 kb on - strand, within Dshi_3086at 3257.535 kb on - strand, within Dshi_3086at 3257.591 kb on + strand, within Dshi_3086at 3257.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,255,063 - -1.4
3,255,330 - Dshi_3085 0.16 +0.6
3,255,366 - Dshi_3085 0.18 -1.2
3,255,413 - Dshi_3085 0.21 +1.6
3,255,427 + Dshi_3085 0.22 +0.9
3,255,458 - Dshi_3085 0.24 +1.6
3,255,886 + Dshi_3085 0.49 +0.3
3,255,899 + Dshi_3085 0.49 +0.3
3,256,010 - Dshi_3085 0.56 +1.6
3,256,025 - Dshi_3085 0.57 +2.6
3,256,152 - Dshi_3085 0.64 -2.0
3,256,263 - Dshi_3085 0.71 -1.4
3,256,330 + Dshi_3085 0.75 +0.6
3,256,711 - +0.2
3,256,797 + +0.4
3,256,872 - Dshi_3086 0.10 +0.9
3,256,876 + Dshi_3086 0.11 -2.2
3,256,876 + Dshi_3086 0.11 +0.9
3,256,935 - Dshi_3086 0.16 -2.5
3,256,974 - Dshi_3086 0.20 +0.6
3,257,064 + Dshi_3086 0.28 -0.9
3,257,089 - Dshi_3086 0.31 -1.0
3,257,459 - Dshi_3086 0.66 +2.2
3,257,535 - Dshi_3086 0.73 -1.7
3,257,591 + Dshi_3086 0.79 -0.3
3,257,712 + -2.1

Or see this region's nucleotide sequence