Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2818 and Dshi_2819 are separated by 382 nucleotides Dshi_2819 and Dshi_2820 are separated by 84 nucleotides Dshi_2820 and Dshi_2821 are separated by 221 nucleotides Dshi_2821 and Dshi_2822 are separated by 23 nucleotides
Dshi_2818: Dshi_2818 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 2,974,910 to 2,975,632
_2818
Dshi_2819: Dshi_2819 - hypothetical protein (RefSeq), at 2,976,015 to 2,976,293
_2819
Dshi_2820: Dshi_2820 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 2,976,378 to 2,977,766
_2820
Dshi_2821: Dshi_2821 - protein of unknown function DUF983 (RefSeq), at 2,977,988 to 2,978,386
_2821
Dshi_2822: Dshi_2822 - NUDIX hydrolase (RefSeq), at 2,978,410 to 2,979,087
_2822
Position (kb)
2976
2977
2978 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2975.409 kb on + strand, within Dshi_2818 at 2975.412 kb on - strand, within Dshi_2818 at 2975.447 kb on - strand, within Dshi_2818 at 2975.493 kb on - strand, within Dshi_2818 at 2975.649 kb on - strand at 2975.649 kb on - strand at 2975.802 kb on + strand at 2975.872 kb on + strand at 2975.872 kb on + strand at 2975.878 kb on - strand at 2975.900 kb on - strand at 2975.974 kb on + strand at 2976.073 kb on + strand, within Dshi_2819 at 2976.084 kb on + strand, within Dshi_2819 at 2976.171 kb on - strand, within Dshi_2819 at 2976.188 kb on + strand, within Dshi_2819 at 2976.233 kb on + strand, within Dshi_2819 at 2976.295 kb on + strand at 2976.302 kb on + strand at 2976.355 kb on - strand at 2976.457 kb on + strand at 2976.457 kb on + strand at 2976.516 kb on - strand at 2976.522 kb on - strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.559 kb on + strand, within Dshi_2820 at 2976.600 kb on + strand, within Dshi_2820 at 2976.662 kb on + strand, within Dshi_2820 at 2976.670 kb on - strand, within Dshi_2820 at 2976.734 kb on + strand, within Dshi_2820 at 2976.789 kb on + strand, within Dshi_2820 at 2976.789 kb on + strand, within Dshi_2820 at 2976.797 kb on - strand, within Dshi_2820 at 2976.878 kb on + strand, within Dshi_2820 at 2976.931 kb on + strand, within Dshi_2820 at 2976.943 kb on - strand, within Dshi_2820 at 2976.955 kb on + strand, within Dshi_2820 at 2977.028 kb on - strand, within Dshi_2820 at 2977.067 kb on + strand, within Dshi_2820 at 2977.079 kb on + strand, within Dshi_2820 at 2977.187 kb on + strand, within Dshi_2820 at 2977.392 kb on + strand, within Dshi_2820 at 2977.424 kb on + strand, within Dshi_2820 at 2977.435 kb on + strand, within Dshi_2820 at 2977.531 kb on + strand, within Dshi_2820 at 2977.597 kb on - strand, within Dshi_2820 at 2977.840 kb on + strand at 2977.840 kb on + strand at 2977.851 kb on + strand at 2977.851 kb on + strand at 2977.859 kb on - strand at 2977.861 kb on + strand at 2977.961 kb on - strand at 2978.004 kb on + strand at 2978.023 kb on - strand at 2978.102 kb on - strand, within Dshi_2821 at 2978.501 kb on + strand, within Dshi_2822 at 2978.555 kb on + strand, within Dshi_2822 at 2978.563 kb on - strand, within Dshi_2822
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 2,975,409 + Dshi_2818 0.69 +2.2 2,975,412 - Dshi_2818 0.69 -2.4 2,975,447 - Dshi_2818 0.74 -1.2 2,975,493 - Dshi_2818 0.81 +1.2 2,975,649 - -2.3 2,975,649 - -2.0 2,975,802 + -0.4 2,975,872 + +1.8 2,975,872 + +1.1 2,975,878 - -1.9 2,975,900 - -0.9 2,975,974 + -0.2 2,976,073 + Dshi_2819 0.21 +2.4 2,976,084 + Dshi_2819 0.25 -0.5 2,976,171 - Dshi_2819 0.56 -1.2 2,976,188 + Dshi_2819 0.62 -0.4 2,976,233 + Dshi_2819 0.78 -0.4 2,976,295 + +0.6 2,976,302 + +2.4 2,976,355 - +2.2 2,976,457 + +1.5 2,976,457 + +1.6 2,976,516 - -0.5 2,976,522 - Dshi_2820 0.10 +0.6 2,976,559 + Dshi_2820 0.13 +1.1 2,976,559 + Dshi_2820 0.13 +0.6 2,976,559 + Dshi_2820 0.13 -0.6 2,976,600 + Dshi_2820 0.16 +1.5 2,976,662 + Dshi_2820 0.20 +1.6 2,976,670 - Dshi_2820 0.21 +0.1 2,976,734 + Dshi_2820 0.26 +0.2 2,976,789 + Dshi_2820 0.30 +1.1 2,976,789 + Dshi_2820 0.30 -0.9 2,976,797 - Dshi_2820 0.30 +2.2 2,976,878 + Dshi_2820 0.36 +0.6 2,976,931 + Dshi_2820 0.40 -0.2 2,976,943 - Dshi_2820 0.41 +0.8 2,976,955 + Dshi_2820 0.42 +3.6 2,977,028 - Dshi_2820 0.47 -2.2 2,977,067 + Dshi_2820 0.50 +1.2 2,977,079 + Dshi_2820 0.50 +2.6 2,977,187 + Dshi_2820 0.58 -0.1 2,977,392 + Dshi_2820 0.73 +0.6 2,977,424 + Dshi_2820 0.75 -0.0 2,977,435 + Dshi_2820 0.76 +0.6 2,977,531 + Dshi_2820 0.83 +0.1 2,977,597 - Dshi_2820 0.88 +1.1 2,977,840 + +0.4 2,977,840 + -2.5 2,977,851 + -1.6 2,977,851 + -0.7 2,977,859 - -1.7 2,977,861 + +0.6 2,977,961 - -0.9 2,978,004 + -1.4 2,978,023 - -2.7 2,978,102 - Dshi_2821 0.29 -0.4 2,978,501 + Dshi_2822 0.13 +0.6 2,978,555 + Dshi_2822 0.21 -0.4 2,978,563 - Dshi_2822 0.23 -0.4
Or see this region's nucleotide sequence