Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2771

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2770 and Dshi_2771 are separated by 137 nucleotidesDshi_2771 and Dshi_2772 are separated by 146 nucleotidesDshi_2772 and Dshi_2773 overlap by 4 nucleotides Dshi_2770: Dshi_2770 - magnesium transporter (RefSeq), at 2,931,759 to 2,933,141 _2770 Dshi_2771: Dshi_2771 - Guanine deaminase (RefSeq), at 2,933,279 to 2,934,565 _2771 Dshi_2772: Dshi_2772 - SCP-like extracellular (RefSeq), at 2,934,712 to 2,935,170 _2772 Dshi_2773: Dshi_2773 - amidohydrolase (RefSeq), at 2,935,167 to 2,936,507 _2773 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2932.732 kb on + strand, within Dshi_2770at 2933.043 kb on + strandat 2933.106 kb on + strandat 2933.146 kb on + strandat 2933.173 kb on + strandat 2933.263 kb on + strandat 2933.263 kb on + strandat 2933.263 kb on + strandat 2933.271 kb on - strandat 2933.271 kb on - strandat 2933.271 kb on - strandat 2933.271 kb on - strandat 2933.337 kb on + strandat 2933.356 kb on - strandat 2933.499 kb on + strand, within Dshi_2771at 2933.576 kb on - strand, within Dshi_2771at 2933.669 kb on + strand, within Dshi_2771at 2933.810 kb on + strand, within Dshi_2771at 2933.889 kb on + strand, within Dshi_2771at 2933.952 kb on + strand, within Dshi_2771at 2933.960 kb on - strand, within Dshi_2771at 2933.978 kb on - strand, within Dshi_2771at 2934.000 kb on - strand, within Dshi_2771at 2934.005 kb on - strand, within Dshi_2771at 2934.040 kb on - strand, within Dshi_2771at 2934.097 kb on - strand, within Dshi_2771at 2934.116 kb on - strand, within Dshi_2771at 2934.137 kb on + strand, within Dshi_2771at 2934.137 kb on + strand, within Dshi_2771at 2934.163 kb on - strand, within Dshi_2771at 2934.182 kb on - strand, within Dshi_2771at 2934.182 kb on - strand, within Dshi_2771at 2934.216 kb on + strand, within Dshi_2771at 2934.265 kb on + strand, within Dshi_2771at 2934.278 kb on - strand, within Dshi_2771at 2934.311 kb on + strand, within Dshi_2771at 2934.313 kb on + strand, within Dshi_2771at 2934.433 kb on + strand, within Dshi_2771at 2934.556 kb on + strandat 2934.609 kb on - strandat 2934.688 kb on + strandat 2934.727 kb on - strandat 2934.780 kb on + strand, within Dshi_2772at 2934.921 kb on + strand, within Dshi_2772at 2934.990 kb on - strand, within Dshi_2772at 2934.990 kb on - strand, within Dshi_2772at 2935.338 kb on + strand, within Dshi_2773at 2935.368 kb on - strand, within Dshi_2773

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,932,732 + Dshi_2770 0.70 -1.5
2,933,043 + +0.6
2,933,106 + +0.6
2,933,146 + -2.4
2,933,173 + +2.6
2,933,263 + -0.9
2,933,263 + +2.2
2,933,263 + +0.6
2,933,271 - -1.0
2,933,271 - -2.3
2,933,271 - -0.6
2,933,271 - +1.8
2,933,337 + -0.4
2,933,356 - -0.6
2,933,499 + Dshi_2771 0.17 -1.0
2,933,576 - Dshi_2771 0.23 -2.8
2,933,669 + Dshi_2771 0.30 +0.6
2,933,810 + Dshi_2771 0.41 -2.6
2,933,889 + Dshi_2771 0.47 -2.0
2,933,952 + Dshi_2771 0.52 +0.6
2,933,960 - Dshi_2771 0.53 -2.8
2,933,978 - Dshi_2771 0.54 +0.6
2,934,000 - Dshi_2771 0.56 -0.8
2,934,005 - Dshi_2771 0.56 +0.6
2,934,040 - Dshi_2771 0.59 -1.3
2,934,097 - Dshi_2771 0.64 -1.0
2,934,116 - Dshi_2771 0.65 -2.4
2,934,137 + Dshi_2771 0.67 +1.8
2,934,137 + Dshi_2771 0.67 -1.6
2,934,163 - Dshi_2771 0.69 +0.6
2,934,182 - Dshi_2771 0.70 +2.6
2,934,182 - Dshi_2771 0.70 -0.7
2,934,216 + Dshi_2771 0.73 -2.8
2,934,265 + Dshi_2771 0.77 -2.8
2,934,278 - Dshi_2771 0.78 +2.2
2,934,311 + Dshi_2771 0.80 -2.2
2,934,313 + Dshi_2771 0.80 -0.2
2,934,433 + Dshi_2771 0.90 +0.6
2,934,556 + +1.1
2,934,609 - -1.1
2,934,688 + +0.6
2,934,727 - +0.6
2,934,780 + Dshi_2772 0.15 -1.0
2,934,921 + Dshi_2772 0.46 +0.6
2,934,990 - Dshi_2772 0.61 -1.2
2,934,990 - Dshi_2772 0.61 -3.2
2,935,338 + Dshi_2773 0.13 -2.0
2,935,368 - Dshi_2773 0.15 +2.9

Or see this region's nucleotide sequence