Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2491 and Dshi_2492 are separated by 12 nucleotides Dshi_2492 and Dshi_2493 overlap by 11 nucleotides Dshi_2493 and Dshi_2494 are separated by 1 nucleotides
Dshi_2491: Dshi_2491 - succinyl-CoA synthetase, beta subunit (RefSeq), at 2,647,390 to 2,648,568
_2491
Dshi_2492: Dshi_2492 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 2,648,581 to 2,649,480
_2492
Dshi_2493: Dshi_2493 - hypothetical protein (RefSeq), at 2,649,470 to 2,650,336
_2493
Dshi_2494: Dshi_2494 - acyl-CoA transferase/carnitine dehydratase-like protein (RefSeq), at 2,650,338 to 2,651,579
_2494
Position (kb)
2649
2650
2651 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2648.578 kb on + strand at 2648.626 kb on - strand at 2648.701 kb on - strand, within Dshi_2492 at 2648.711 kb on - strand, within Dshi_2492 at 2648.722 kb on + strand, within Dshi_2492 at 2648.730 kb on - strand, within Dshi_2492 at 2648.766 kb on + strand, within Dshi_2492 at 2648.789 kb on - strand, within Dshi_2492 at 2648.862 kb on + strand, within Dshi_2492 at 2648.897 kb on - strand, within Dshi_2492 at 2648.952 kb on - strand, within Dshi_2492 at 2648.991 kb on + strand, within Dshi_2492 at 2649.015 kb on + strand, within Dshi_2492 at 2649.079 kb on + strand, within Dshi_2492 at 2649.174 kb on + strand, within Dshi_2492 at 2649.200 kb on - strand, within Dshi_2492 at 2649.284 kb on - strand, within Dshi_2492 at 2649.309 kb on + strand, within Dshi_2492 at 2649.346 kb on + strand, within Dshi_2492 at 2649.395 kb on - strand at 2649.427 kb on + strand at 2649.440 kb on - strand at 2649.523 kb on + strand at 2649.531 kb on - strand at 2649.603 kb on + strand, within Dshi_2493 at 2649.722 kb on + strand, within Dshi_2493 at 2649.729 kb on + strand, within Dshi_2493 at 2649.734 kb on - strand, within Dshi_2493 at 2649.739 kb on + strand, within Dshi_2493 at 2649.750 kb on + strand, within Dshi_2493 at 2649.781 kb on - strand, within Dshi_2493 at 2649.842 kb on + strand, within Dshi_2493 at 2649.850 kb on - strand, within Dshi_2493 at 2649.896 kb on - strand, within Dshi_2493 at 2649.941 kb on + strand, within Dshi_2493 at 2649.967 kb on + strand, within Dshi_2493 at 2649.974 kb on + strand, within Dshi_2493 at 2649.975 kb on - strand, within Dshi_2493 at 2650.017 kb on - strand, within Dshi_2493 at 2650.068 kb on + strand, within Dshi_2493 at 2650.149 kb on + strand, within Dshi_2493 at 2650.157 kb on - strand, within Dshi_2493 at 2650.179 kb on + strand, within Dshi_2493 at 2650.224 kb on + strand at 2650.307 kb on - strand at 2650.375 kb on + strand at 2650.392 kb on + strand at 2650.421 kb on + strand at 2650.431 kb on + strand at 2650.451 kb on + strand at 2650.497 kb on + strand, within Dshi_2494 at 2650.526 kb on - strand, within Dshi_2494 at 2650.839 kb on + strand, within Dshi_2494 at 2650.847 kb on - strand, within Dshi_2494 at 2650.925 kb on - strand, within Dshi_2494 at 2650.956 kb on + strand, within Dshi_2494 at 2650.992 kb on - strand, within Dshi_2494 at 2650.994 kb on + strand, within Dshi_2494 at 2651.092 kb on + strand, within Dshi_2494 at 2651.100 kb on - strand, within Dshi_2494 at 2651.102 kb on + strand, within Dshi_2494 at 2651.102 kb on + strand, within Dshi_2494 at 2651.103 kb on + strand, within Dshi_2494 at 2651.110 kb on - strand, within Dshi_2494 at 2651.110 kb on - strand, within Dshi_2494 at 2651.110 kb on - strand, within Dshi_2494 at 2651.110 kb on - strand, within Dshi_2494 at 2651.218 kb on - strand, within Dshi_2494 at 2651.287 kb on - strand, within Dshi_2494 at 2651.292 kb on - strand, within Dshi_2494
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 2,648,578 + -2.4 2,648,626 - +1.5 2,648,701 - Dshi_2492 0.13 -0.7 2,648,711 - Dshi_2492 0.14 +1.3 2,648,722 + Dshi_2492 0.16 +0.3 2,648,730 - Dshi_2492 0.17 -2.0 2,648,766 + Dshi_2492 0.21 +0.0 2,648,789 - Dshi_2492 0.23 -0.2 2,648,862 + Dshi_2492 0.31 +1.6 2,648,897 - Dshi_2492 0.35 -4.0 2,648,952 - Dshi_2492 0.41 -0.3 2,648,991 + Dshi_2492 0.46 +0.3 2,649,015 + Dshi_2492 0.48 +0.4 2,649,079 + Dshi_2492 0.55 +0.7 2,649,174 + Dshi_2492 0.66 +0.9 2,649,200 - Dshi_2492 0.69 +1.3 2,649,284 - Dshi_2492 0.78 +2.3 2,649,309 + Dshi_2492 0.81 +0.2 2,649,346 + Dshi_2492 0.85 -0.7 2,649,395 - +0.3 2,649,427 + +1.9 2,649,440 - +0.3 2,649,523 + -0.4 2,649,531 - -3.0 2,649,603 + Dshi_2493 0.15 -1.2 2,649,722 + Dshi_2493 0.29 -1.2 2,649,729 + Dshi_2493 0.30 -1.3 2,649,734 - Dshi_2493 0.30 +0.6 2,649,739 + Dshi_2493 0.31 -0.7 2,649,750 + Dshi_2493 0.32 -0.1 2,649,781 - Dshi_2493 0.36 -1.0 2,649,842 + Dshi_2493 0.43 -0.2 2,649,850 - Dshi_2493 0.44 -1.3 2,649,896 - Dshi_2493 0.49 -2.5 2,649,941 + Dshi_2493 0.54 +2.7 2,649,967 + Dshi_2493 0.57 -2.2 2,649,974 + Dshi_2493 0.58 -0.9 2,649,975 - Dshi_2493 0.58 -3.4 2,650,017 - Dshi_2493 0.63 +2.3 2,650,068 + Dshi_2493 0.69 -0.2 2,650,149 + Dshi_2493 0.78 +0.9 2,650,157 - Dshi_2493 0.79 +1.1 2,650,179 + Dshi_2493 0.82 -2.5 2,650,224 + +0.3 2,650,307 - +1.9 2,650,375 + -3.0 2,650,392 + +1.3 2,650,421 + -1.7 2,650,431 + -0.8 2,650,451 + +0.5 2,650,497 + Dshi_2494 0.13 -1.2 2,650,526 - Dshi_2494 0.15 -0.2 2,650,839 + Dshi_2494 0.40 +1.4 2,650,847 - Dshi_2494 0.41 +0.4 2,650,925 - Dshi_2494 0.47 +1.8 2,650,956 + Dshi_2494 0.50 -0.2 2,650,992 - Dshi_2494 0.53 -0.9 2,650,994 + Dshi_2494 0.53 +0.4 2,651,092 + Dshi_2494 0.61 -0.2 2,651,100 - Dshi_2494 0.61 +0.4 2,651,102 + Dshi_2494 0.62 +0.4 2,651,102 + Dshi_2494 0.62 +0.4 2,651,103 + Dshi_2494 0.62 -2.3 2,651,110 - Dshi_2494 0.62 +0.5 2,651,110 - Dshi_2494 0.62 -1.1 2,651,110 - Dshi_2494 0.62 -0.6 2,651,110 - Dshi_2494 0.62 -0.4 2,651,218 - Dshi_2494 0.71 -1.2 2,651,287 - Dshi_2494 0.76 -1.1 2,651,292 - Dshi_2494 0.77 +1.1
Or see this region's nucleotide sequence