Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2410

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2410 and Dshi_2411 are separated by 172 nucleotides Dshi_2410: Dshi_2410 - O-succinylhomoserine sulfhydrylase (RefSeq), at 2,546,843 to 2,548,021 _2410 Dshi_2411: Dshi_2411 - protein of unknown function DUF198 (RefSeq), at 2,548,194 to 2,549,297 _2411 Position (kb) 2546 2547 2548 2549Strain fitness (log2 ratio) -2 -1 0 1 2at 2546.043 kb on - strandat 2546.217 kb on + strandat 2546.217 kb on + strandat 2546.225 kb on + strandat 2546.261 kb on - strandat 2546.527 kb on - strandat 2546.678 kb on - strandat 2546.730 kb on + strandat 2548.112 kb on - strandat 2548.165 kb on + strandat 2548.188 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,546,043 - -2.1
2,546,217 + -0.2
2,546,217 + -2.6
2,546,225 + -0.4
2,546,261 - -2.4
2,546,527 - +0.2
2,546,678 - +1.8
2,546,730 + -1.4
2,548,112 - -0.6
2,548,165 + -1.8
2,548,188 + +0.2

Or see this region's nucleotide sequence