Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2062 and Dshi_2063 overlap by 4 nucleotides Dshi_2063 and Dshi_2064 are separated by 32 nucleotides Dshi_2064 and Dshi_2065 are separated by 75 nucleotides Dshi_2065 and Dshi_2066 are separated by 5 nucleotides
Dshi_2062: Dshi_2062 - PTSINtr with GAF domain, PtsP (RefSeq), at 2,182,811 to 2,185,054
_2062
Dshi_2063: Dshi_2063 - von Willebrand factor type A (RefSeq), at 2,185,051 to 2,185,806
_2063
Dshi_2064: Dshi_2064 - GCN5-related N-acetyltransferase (RefSeq), at 2,185,839 to 2,186,339
_2064
Dshi_2065: Dshi_2065 - flavin reductase-like, FMN-binding (RefSeq), at 2,186,415 to 2,187,020
_2065
Dshi_2066: Dshi_2066 - hypothetical protein (RefSeq), at 2,187,026 to 2,187,301
_2066
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2185.107 kb on - strand at 2185.173 kb on - strand, within Dshi_2063 at 2185.173 kb on - strand, within Dshi_2063 at 2185.192 kb on + strand, within Dshi_2063 at 2185.200 kb on - strand, within Dshi_2063 at 2185.292 kb on + strand, within Dshi_2063 at 2185.697 kb on - strand, within Dshi_2063 at 2185.730 kb on + strand, within Dshi_2063 at 2185.792 kb on - strand at 2186.373 kb on + strand at 2186.417 kb on - strand at 2186.677 kb on + strand, within Dshi_2065 at 2186.683 kb on - strand, within Dshi_2065 at 2186.714 kb on + strand, within Dshi_2065 at 2187.093 kb on + strand, within Dshi_2066
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 2,185,107 - +0.6 2,185,173 - Dshi_2063 0.16 +0.9 2,185,173 - Dshi_2063 0.16 -0.5 2,185,192 + Dshi_2063 0.19 +1.0 2,185,200 - Dshi_2063 0.20 -0.1 2,185,292 + Dshi_2063 0.32 -0.2 2,185,697 - Dshi_2063 0.85 -1.5 2,185,730 + Dshi_2063 0.90 +2.3 2,185,792 - +1.2 2,186,373 + -0.2 2,186,417 - -1.5 2,186,677 + Dshi_2065 0.43 +2.8 2,186,683 - Dshi_2065 0.44 -1.1 2,186,714 + Dshi_2065 0.49 -1.0 2,187,093 + Dshi_2066 0.24 +1.9
Or see this region's nucleotide sequence