Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_5006

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2045 and Dshi_5006 are separated by 3 nucleotidesDshi_5006 and Dshi_2047 are separated by 0 nucleotidesDshi_2047 and Dshi_2048 are separated by 6 nucleotides Dshi_2045: Dshi_2045 - thiamine pyrophosphate protein central region (RefSeq), at 2,164,196 to 2,165,974 _2045 Dshi_5006: Dshi_5006 - hypothetical protein (NCBI), at 2,165,978 to 2,167,135 _5006 Dshi_2047: Dshi_2047 - hypothetical protein (RefSeq), at 2,167,136 to 2,167,762 _2047 Dshi_2048: Dshi_2048 - Mammalian cell entry related domain protein (RefSeq), at 2,167,769 to 2,169,508 _2048 Position (kb) 2165 2166 2167 2168Strain fitness (log2 ratio) -3 -2 -1 0 1at 2166.217 kb on + strand, within Dshi_5006at 2166.217 kb on + strand, within Dshi_5006at 2166.339 kb on - strand, within Dshi_5006at 2166.794 kb on - strand, within Dshi_5006at 2167.036 kb on - strandat 2167.037 kb on + strandat 2167.181 kb on - strandat 2167.355 kb on - strand, within Dshi_2047at 2167.472 kb on + strand, within Dshi_2047at 2167.552 kb on - strand, within Dshi_2047at 2167.975 kb on - strand, within Dshi_2048at 2168.095 kb on + strand, within Dshi_2048

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,166,217 + Dshi_5006 0.21 -2.9
2,166,217 + Dshi_5006 0.21 -1.1
2,166,339 - Dshi_5006 0.31 +0.4
2,166,794 - Dshi_5006 0.70 -2.4
2,167,036 - -2.3
2,167,037 + -0.6
2,167,181 - -1.6
2,167,355 - Dshi_2047 0.35 -1.1
2,167,472 + Dshi_2047 0.54 -0.9
2,167,552 - Dshi_2047 0.66 +1.2
2,167,975 - Dshi_2048 0.12 +0.6
2,168,095 + Dshi_2048 0.19 -0.8

Or see this region's nucleotide sequence