Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1770

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1769 and Dshi_1770 are separated by 126 nucleotidesDshi_1770 and Dshi_1771 are separated by 135 nucleotides Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505 _1769 Dshi_1770: Dshi_1770 - hypothetical protein (RefSeq), at 1,837,632 to 1,837,898 _1770 Dshi_1771: Dshi_1771 - hypothetical protein (RefSeq), at 1,838,034 to 1,839,236 _1771 Position (kb) 1837 1838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1836.749 kb on - strand, within Dshi_1769at 1836.878 kb on + strand, within Dshi_1769at 1837.162 kb on - strand, within Dshi_1769at 1837.364 kb on - strandat 1837.437 kb on - strandat 1837.595 kb on - strandat 1837.606 kb on - strandat 1837.618 kb on + strandat 1837.626 kb on - strandat 1837.690 kb on + strand, within Dshi_1770at 1837.758 kb on - strand, within Dshi_1770at 1837.795 kb on + strand, within Dshi_1770at 1837.886 kb on - strandat 1837.946 kb on - strandat 1838.073 kb on + strandat 1838.322 kb on - strand, within Dshi_1771at 1838.403 kb on - strand, within Dshi_1771at 1838.432 kb on - strand, within Dshi_1771at 1838.608 kb on - strand, within Dshi_1771at 1838.816 kb on - strand, within Dshi_1771

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,836,749 - Dshi_1769 0.58 -1.1
1,836,878 + Dshi_1769 0.65 -4.3
1,837,162 - Dshi_1769 0.81 +1.9
1,837,364 - -0.3
1,837,437 - +0.3
1,837,595 - -2.2
1,837,606 - +0.3
1,837,618 + -1.6
1,837,626 - +0.9
1,837,690 + Dshi_1770 0.22 +3.3
1,837,758 - Dshi_1770 0.47 +3.7
1,837,795 + Dshi_1770 0.61 +1.4
1,837,886 - +1.6
1,837,946 - +0.6
1,838,073 + -1.1
1,838,322 - Dshi_1771 0.24 -2.5
1,838,403 - Dshi_1771 0.31 -0.0
1,838,432 - Dshi_1771 0.33 -0.8
1,838,608 - Dshi_1771 0.48 +2.6
1,838,816 - Dshi_1771 0.65 -0.3

Or see this region's nucleotide sequence