Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1767

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1766 and Dshi_1767 are separated by 150 nucleotidesDshi_1767 and Dshi_1768 are separated by 181 nucleotidesDshi_1768 and Dshi_1769 are separated by 11 nucleotides Dshi_1766: Dshi_1766 - peptidoglycan-binding LysM (RefSeq), at 1,832,580 to 1,834,175 _1766 Dshi_1767: Dshi_1767 - hypothetical protein (RefSeq), at 1,834,326 to 1,834,865 _1767 Dshi_1768: Dshi_1768 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq), at 1,835,047 to 1,835,688 _1768 Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505 _1769 Position (kb) 1834 1835Strain fitness (log2 ratio) -3 -2 -1 0 1at 1833.433 kb on - strand, within Dshi_1766at 1834.343 kb on + strandat 1834.444 kb on + strand, within Dshi_1767at 1834.457 kb on - strand, within Dshi_1767at 1834.574 kb on + strand, within Dshi_1767at 1834.643 kb on - strand, within Dshi_1767at 1834.674 kb on + strand, within Dshi_1767at 1834.847 kb on - strandat 1834.947 kb on - strandat 1834.947 kb on - strandat 1834.963 kb on + strandat 1834.995 kb on + strandat 1835.037 kb on - strandat 1835.585 kb on + strand, within Dshi_1768

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,833,433 - Dshi_1766 0.53 -2.6
1,834,343 + -0.6
1,834,444 + Dshi_1767 0.22 +1.3
1,834,457 - Dshi_1767 0.24 -1.7
1,834,574 + Dshi_1767 0.46 -1.6
1,834,643 - Dshi_1767 0.59 -0.7
1,834,674 + Dshi_1767 0.64 -1.7
1,834,847 - -0.2
1,834,947 - -1.1
1,834,947 - -3.4
1,834,963 + -0.9
1,834,995 + +1.3
1,835,037 - -1.6
1,835,585 + Dshi_1768 0.84 -2.1

Or see this region's nucleotide sequence