Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1764

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1763 and Dshi_1764 are separated by 242 nucleotidesDshi_1764 and Dshi_1765 are separated by 0 nucleotides Dshi_1763: Dshi_1763 - transcriptional regulator, LysR family (RefSeq), at 1,828,760 to 1,829,662 _1763 Dshi_1764: Dshi_1764 - Esterase/lipase-like protein (RefSeq), at 1,829,905 to 1,830,690 _1764 Dshi_1765: Dshi_1765 - ABC transporter related (RefSeq), at 1,830,691 to 1,832,526 _1765 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -2 -1 0 1at 1829.846 kb on + strandat 1829.861 kb on + strandat 1830.011 kb on + strand, within Dshi_1764at 1830.021 kb on + strand, within Dshi_1764at 1830.065 kb on + strand, within Dshi_1764at 1830.137 kb on + strand, within Dshi_1764at 1830.289 kb on - strand, within Dshi_1764at 1830.393 kb on - strand, within Dshi_1764at 1830.451 kb on + strand, within Dshi_1764at 1830.874 kb on + strandat 1830.888 kb on + strand, within Dshi_1765at 1830.896 kb on - strand, within Dshi_1765at 1830.974 kb on + strand, within Dshi_1765at 1831.239 kb on + strand, within Dshi_1765at 1831.312 kb on - strand, within Dshi_1765at 1831.629 kb on - strand, within Dshi_1765at 1831.674 kb on + strand, within Dshi_1765at 1831.675 kb on + strand, within Dshi_1765at 1831.687 kb on - strand, within Dshi_1765

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,829,846 + -0.7
1,829,861 + -2.5
1,830,011 + Dshi_1764 0.13 -0.9
1,830,021 + Dshi_1764 0.15 -0.3
1,830,065 + Dshi_1764 0.20 -0.1
1,830,137 + Dshi_1764 0.30 +0.7
1,830,289 - Dshi_1764 0.49 -0.7
1,830,393 - Dshi_1764 0.62 -2.0
1,830,451 + Dshi_1764 0.69 -2.1
1,830,874 + -0.6
1,830,888 + Dshi_1765 0.11 +0.2
1,830,896 - Dshi_1765 0.11 -1.3
1,830,974 + Dshi_1765 0.15 -0.0
1,831,239 + Dshi_1765 0.30 +0.3
1,831,312 - Dshi_1765 0.34 -0.3
1,831,629 - Dshi_1765 0.51 -0.8
1,831,674 + Dshi_1765 0.54 -1.6
1,831,675 + Dshi_1765 0.54 +0.2
1,831,687 - Dshi_1765 0.54 -1.2

Or see this region's nucleotide sequence