Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1709 and Dshi_1710 are separated by 230 nucleotides Dshi_1710 and Dshi_1711 overlap by 8 nucleotides Dshi_1711 and Dshi_1712 overlap by 1 nucleotides Dshi_1712 and Dshi_1713 are separated by 98 nucleotides
Dshi_1709: Dshi_1709 - MscS Mechanosensitive ion channel (RefSeq), at 1,776,333 to 1,777,817
_1709
Dshi_1710: Dshi_1710 - glutaredoxin-like protein (RefSeq), at 1,778,048 to 1,778,410
_1710
Dshi_1711: Dshi_1711 - hypothetical protein (RefSeq), at 1,778,403 to 1,778,669
_1711
Dshi_1712: Dshi_1712 - BolA family protein (RefSeq), at 1,778,669 to 1,778,902
_1712
Dshi_1713: Dshi_1713 - phosphoribosylformylglycinamidine synthase II (RefSeq), at 1,779,001 to 1,781,172
_1713
Position (kb)
1778
1779 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1777.443 kb on - strand, within Dshi_1709 at 1777.572 kb on - strand, within Dshi_1709 at 1777.647 kb on + strand, within Dshi_1709 at 1777.806 kb on - strand at 1777.893 kb on + strand at 1778.098 kb on - strand, within Dshi_1710 at 1778.420 kb on - strand at 1778.610 kb on + strand, within Dshi_1711 at 1778.662 kb on - strand at 1778.964 kb on + strand at 1779.024 kb on + strand at 1779.405 kb on - strand, within Dshi_1713 at 1779.525 kb on + strand, within Dshi_1713 at 1779.576 kb on + strand, within Dshi_1713
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 1,777,443 - Dshi_1709 0.75 +1.9 1,777,572 - Dshi_1709 0.83 -3.3 1,777,647 + Dshi_1709 0.88 +0.3 1,777,806 - -2.0 1,777,893 + -1.0 1,778,098 - Dshi_1710 0.14 +1.3 1,778,420 - -1.3 1,778,610 + Dshi_1711 0.78 -1.7 1,778,662 - -1.7 1,778,964 + +1.9 1,779,024 + +1.9 1,779,405 - Dshi_1713 0.19 -0.7 1,779,525 + Dshi_1713 0.24 +0.7 1,779,576 + Dshi_1713 0.26 -0.8
Or see this region's nucleotide sequence