Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1513

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1512 and Dshi_1513 are separated by 52 nucleotidesDshi_1513 and Dshi_1514 are separated by 79 nucleotidesDshi_1514 and Dshi_1515 are separated by 3 nucleotides Dshi_1512: Dshi_1512 - cytochrome oxidase assembly (RefSeq), at 1,574,911 to 1,576,062 _1512 Dshi_1513: Dshi_1513 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 1,576,115 to 1,576,882 _1513 Dshi_1514: Dshi_1514 - thiamine monophosphate synthase (RefSeq), at 1,576,962 to 1,577,585 _1514 Dshi_1515: Dshi_1515 - Phosphoribosyl-AMP cyclohydrolase (RefSeq), at 1,577,589 to 1,577,948 _1515 Position (kb) 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1576.096 kb on - strandat 1576.316 kb on - strand, within Dshi_1513at 1576.406 kb on - strand, within Dshi_1513at 1576.885 kb on + strandat 1576.885 kb on + strandat 1576.885 kb on + strandat 1576.893 kb on - strandat 1577.130 kb on - strand, within Dshi_1514at 1577.270 kb on + strand, within Dshi_1514at 1577.328 kb on + strand, within Dshi_1514at 1577.328 kb on + strand, within Dshi_1514at 1577.485 kb on + strand, within Dshi_1514at 1577.533 kb on - strandat 1577.587 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
1,576,096 - +0.2
1,576,316 - Dshi_1513 0.26 -2.8
1,576,406 - Dshi_1513 0.38 -0.4
1,576,885 + +2.2
1,576,885 + -1.4
1,576,885 + +0.8
1,576,893 - -2.4
1,577,130 - Dshi_1514 0.27 -0.4
1,577,270 + Dshi_1514 0.49 -1.5
1,577,328 + Dshi_1514 0.59 +0.2
1,577,328 + Dshi_1514 0.59 +1.5
1,577,485 + Dshi_1514 0.84 -0.6
1,577,533 - -2.0
1,577,587 + -0.5

Or see this region's nucleotide sequence