Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1239 and Dshi_1240 overlap by 4 nucleotides Dshi_1240 and Dshi_1241 overlap by 4 nucleotides Dshi_1241 and Dshi_1242 overlap by 4 nucleotides Dshi_1242 and Dshi_1243 overlap by 4 nucleotides
Dshi_1239: Dshi_1239 - Beta-galactosidase (RefSeq), at 1,285,260 to 1,287,167
_1239
Dshi_1240: Dshi_1240 - SMP-30/Gluconolaconase/LRE domain protein (RefSeq), at 1,287,164 to 1,288,024
_1240
Dshi_1241: Dshi_1241 - KDPG and KHG aldolase (RefSeq), at 1,288,021 to 1,288,626
_1241
Dshi_1242: Dshi_1242 - 2-dehydro-3-deoxygalactonokinase (RefSeq), at 1,288,623 to 1,289,519
_1242
Dshi_1243: Dshi_1243 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,289,516 to 1,290,292
_1243
Position (kb)
1288
1289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1287.347 kb on - strand, within Dshi_1240 at 1287.588 kb on - strand, within Dshi_1240 at 1287.594 kb on + strand, within Dshi_1240 at 1287.716 kb on - strand, within Dshi_1240 at 1287.887 kb on + strand, within Dshi_1240 at 1288.013 kb on - strand at 1288.071 kb on + strand at 1288.072 kb on + strand at 1288.098 kb on - strand, within Dshi_1241 at 1288.119 kb on - strand, within Dshi_1241 at 1288.181 kb on + strand, within Dshi_1241 at 1288.220 kb on + strand, within Dshi_1241 at 1288.281 kb on + strand, within Dshi_1241 at 1288.352 kb on + strand, within Dshi_1241 at 1288.360 kb on - strand, within Dshi_1241 at 1288.368 kb on + strand, within Dshi_1241 at 1288.381 kb on - strand, within Dshi_1241 at 1288.422 kb on + strand, within Dshi_1241 at 1288.476 kb on - strand, within Dshi_1241 at 1288.595 kb on - strand at 1288.630 kb on + strand at 1288.638 kb on - strand at 1288.656 kb on + strand at 1288.662 kb on - strand at 1288.728 kb on + strand, within Dshi_1242 at 1288.753 kb on - strand, within Dshi_1242 at 1288.783 kb on - strand, within Dshi_1242 at 1288.927 kb on - strand, within Dshi_1242 at 1288.939 kb on - strand, within Dshi_1242 at 1288.952 kb on - strand, within Dshi_1242 at 1289.009 kb on + strand, within Dshi_1242 at 1289.197 kb on - strand, within Dshi_1242 at 1289.254 kb on + strand, within Dshi_1242 at 1289.257 kb on - strand, within Dshi_1242 at 1289.262 kb on - strand, within Dshi_1242 at 1289.291 kb on + strand, within Dshi_1242
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 1,287,347 - Dshi_1240 0.21 -2.8 1,287,588 - Dshi_1240 0.49 +0.4 1,287,594 + Dshi_1240 0.50 -0.2 1,287,716 - Dshi_1240 0.64 -0.2 1,287,887 + Dshi_1240 0.84 +0.4 1,288,013 - +0.2 1,288,071 + +1.4 1,288,072 + -2.3 1,288,098 - Dshi_1241 0.13 +0.7 1,288,119 - Dshi_1241 0.16 -0.1 1,288,181 + Dshi_1241 0.26 -0.2 1,288,220 + Dshi_1241 0.33 +0.4 1,288,281 + Dshi_1241 0.43 -0.6 1,288,352 + Dshi_1241 0.55 -0.8 1,288,360 - Dshi_1241 0.56 +0.4 1,288,368 + Dshi_1241 0.57 -0.1 1,288,381 - Dshi_1241 0.59 -1.2 1,288,422 + Dshi_1241 0.66 -1.6 1,288,476 - Dshi_1241 0.75 +0.7 1,288,595 - -1.4 1,288,630 + -0.4 1,288,638 - -2.6 1,288,656 + -0.4 1,288,662 - -2.0 1,288,728 + Dshi_1242 0.12 -0.7 1,288,753 - Dshi_1242 0.14 +3.0 1,288,783 - Dshi_1242 0.18 -2.4 1,288,927 - Dshi_1242 0.34 +1.2 1,288,939 - Dshi_1242 0.35 -1.8 1,288,952 - Dshi_1242 0.37 +2.7 1,289,009 + Dshi_1242 0.43 +0.7 1,289,197 - Dshi_1242 0.64 +2.4 1,289,254 + Dshi_1242 0.70 -0.1 1,289,257 - Dshi_1242 0.71 -0.9 1,289,262 - Dshi_1242 0.71 +0.4 1,289,291 + Dshi_1242 0.74 +1.0
Or see this region's nucleotide sequence