Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0953 and Dshi_0954 are separated by 250 nucleotides Dshi_0954 and Dshi_0955 are separated by 36 nucleotides Dshi_0955 and Dshi_0956 overlap by 1 nucleotides
Dshi_0953: Dshi_0953 - MATE efflux family protein (RefSeq), at 977,230 to 978,582
_0953
Dshi_0954: Dshi_0954 - GTP-binding protein YchF (RefSeq), at 978,833 to 979,930
_0954
Dshi_0955: Dshi_0955 - hydantoin racemase (RefSeq), at 979,967 to 980,662
_0955
Dshi_0956: Dshi_0956 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 980,662 to 981,948
_0956
Position (kb) 978
979
980 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 977.955 kb on + strand, within Dshi_0953 at 977.994 kb on - strand, within Dshi_0953 at 978.006 kb on + strand, within Dshi_0953 at 978.020 kb on + strand, within Dshi_0953 at 978.057 kb on - strand, within Dshi_0953 at 978.080 kb on + strand, within Dshi_0953 at 978.259 kb on + strand, within Dshi_0953 at 978.329 kb on + strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.337 kb on - strand, within Dshi_0953 at 978.349 kb on + strand, within Dshi_0953 at 978.378 kb on - strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.437 kb on + strand, within Dshi_0953 at 978.556 kb on + strand at 978.584 kb on + strand at 978.595 kb on - strand at 978.645 kb on + strand at 978.652 kb on - strand at 978.729 kb on - strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.756 kb on + strand at 978.764 kb on - strand at 979.160 kb on - strand, within Dshi_0954 at 979.930 kb on + strand at 980.187 kb on - strand, within Dshi_0955 at 980.298 kb on + strand, within Dshi_0955 at 980.301 kb on - strand, within Dshi_0955 at 980.301 kb on - strand, within Dshi_0955 at 980.419 kb on - strand, within Dshi_0955 at 980.475 kb on - strand, within Dshi_0955 at 980.553 kb on + strand, within Dshi_0955 at 980.553 kb on + strand, within Dshi_0955 at 980.587 kb on - strand, within Dshi_0955 at 980.721 kb on + strand at 980.754 kb on - strand at 980.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 977,955 + Dshi_0953 0.54 -1.2 977,994 - Dshi_0953 0.56 +0.1 978,006 + Dshi_0953 0.57 +1.4 978,020 + Dshi_0953 0.58 +2.1 978,057 - Dshi_0953 0.61 +1.0 978,080 + Dshi_0953 0.63 -3.1 978,259 + Dshi_0953 0.76 -2.0 978,329 + Dshi_0953 0.81 +0.4 978,337 - Dshi_0953 0.82 -0.4 978,337 - Dshi_0953 0.82 -2.9 978,349 + Dshi_0953 0.83 +0.4 978,378 - Dshi_0953 0.85 -2.2 978,437 + Dshi_0953 0.89 -0.6 978,437 + Dshi_0953 0.89 +0.8 978,556 + +1.9 978,584 + -2.7 978,595 - +1.4 978,645 + -0.3 978,652 - -0.5 978,729 - -1.4 978,756 + +3.0 978,756 + -0.5 978,756 + -1.5 978,764 - -1.7 979,160 - Dshi_0954 0.30 -3.8 979,930 + -0.4 980,187 - Dshi_0955 0.32 -0.0 980,298 + Dshi_0955 0.48 -1.4 980,301 - Dshi_0955 0.48 -0.9 980,301 - Dshi_0955 0.48 +3.0 980,419 - Dshi_0955 0.65 +1.2 980,475 - Dshi_0955 0.73 +2.1 980,553 + Dshi_0955 0.84 -0.5 980,553 + Dshi_0955 0.84 -0.6 980,587 - Dshi_0955 0.89 -1.0 980,721 + +2.0 980,754 - +2.4 980,790 + -0.6
Or see this region's nucleotide sequence