Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0801 and Dshi_0802 overlap by 4 nucleotides Dshi_0802 and Dshi_0803 are separated by 50 nucleotides Dshi_0803 and Dshi_0804 are separated by 109 nucleotides
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Dshi_0802: Dshi_0802 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 808,526 to 809,254
_0802
Dshi_0803: Dshi_0803 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 809,305 to 810,537
_0803
Dshi_0804: Dshi_0804 - glucose-methanol-choline oxidoreductase (RefSeq), at 810,647 to 812,269
_0804
Position (kb) 809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 808.401 kb on - strand at 808.544 kb on + strand at 808.544 kb on + strand at 808.631 kb on - strand, within Dshi_0802 at 808.672 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.828 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.862 kb on + strand, within Dshi_0802 at 808.880 kb on - strand, within Dshi_0802 at 809.008 kb on - strand, within Dshi_0802 at 809.010 kb on - strand, within Dshi_0802 at 809.116 kb on + strand, within Dshi_0802 at 809.179 kb on + strand, within Dshi_0802 at 809.182 kb on - strand at 809.233 kb on + strand at 809.271 kb on - strand at 809.271 kb on - strand at 809.378 kb on - strand at 809.573 kb on + strand, within Dshi_0803 at 809.578 kb on + strand, within Dshi_0803 at 809.581 kb on - strand, within Dshi_0803 at 809.586 kb on - strand, within Dshi_0803 at 809.698 kb on - strand, within Dshi_0803 at 809.779 kb on + strand, within Dshi_0803 at 809.805 kb on + strand, within Dshi_0803 at 809.847 kb on + strand, within Dshi_0803 at 809.854 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.944 kb on - strand, within Dshi_0803 at 809.975 kb on - strand, within Dshi_0803 at 810.035 kb on + strand, within Dshi_0803 at 810.068 kb on + strand, within Dshi_0803 at 810.103 kb on + strand, within Dshi_0803 at 810.104 kb on + strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.256 kb on + strand, within Dshi_0803 at 810.267 kb on + strand, within Dshi_0803 at 810.336 kb on - strand, within Dshi_0803 at 810.339 kb on + strand, within Dshi_0803 at 810.339 kb on + strand, within Dshi_0803 at 810.353 kb on - strand, within Dshi_0803 at 810.356 kb on + strand, within Dshi_0803 at 810.364 kb on - strand, within Dshi_0803 at 810.364 kb on - strand, within Dshi_0803 at 810.366 kb on + strand, within Dshi_0803 at 810.520 kb on - strand at 810.552 kb on - strand at 810.658 kb on - strand at 810.706 kb on + strand at 810.717 kb on - strand at 810.793 kb on + strand at 810.816 kb on - strand, within Dshi_0804 at 810.859 kb on - strand, within Dshi_0804 at 810.947 kb on + strand, within Dshi_0804 at 810.980 kb on + strand, within Dshi_0804 at 810.980 kb on + strand, within Dshi_0804 at 811.180 kb on - strand, within Dshi_0804 at 811.181 kb on + strand, within Dshi_0804 at 811.276 kb on - strand, within Dshi_0804 at 811.300 kb on - strand, within Dshi_0804 at 811.332 kb on - strand, within Dshi_0804 at 811.336 kb on + strand, within Dshi_0804 at 811.336 kb on + strand, within Dshi_0804 at 811.337 kb on + strand, within Dshi_0804 at 811.344 kb on - strand, within Dshi_0804 at 811.360 kb on + strand, within Dshi_0804 at 811.366 kb on + strand, within Dshi_0804 at 811.396 kb on - strand, within Dshi_0804 at 811.426 kb on - strand, within Dshi_0804 at 811.481 kb on - strand, within Dshi_0804 at 811.481 kb on - strand, within Dshi_0804
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 808,401 - +0.1 808,544 + -1.6 808,544 + -1.6 808,631 - Dshi_0802 0.14 -1.4 808,672 - Dshi_0802 0.20 +1.8 808,727 - Dshi_0802 0.28 -1.9 808,727 - Dshi_0802 0.28 +1.3 808,734 + Dshi_0802 0.29 -1.1 808,734 + Dshi_0802 0.29 -0.3 808,828 + Dshi_0802 0.41 +0.5 808,838 + Dshi_0802 0.43 +0.5 808,838 + Dshi_0802 0.43 -0.6 808,862 + Dshi_0802 0.46 +0.5 808,880 - Dshi_0802 0.49 +2.5 809,008 - Dshi_0802 0.66 -0.2 809,010 - Dshi_0802 0.66 +3.5 809,116 + Dshi_0802 0.81 +1.0 809,179 + Dshi_0802 0.90 -1.0 809,182 - +0.2 809,233 + +0.0 809,271 - +0.5 809,271 - -0.7 809,378 - -0.7 809,573 + Dshi_0803 0.22 +0.0 809,578 + Dshi_0803 0.22 +0.1 809,581 - Dshi_0803 0.22 -3.3 809,586 - Dshi_0803 0.23 -0.2 809,698 - Dshi_0803 0.32 +0.4 809,779 + Dshi_0803 0.38 -1.7 809,805 + Dshi_0803 0.41 +0.5 809,847 + Dshi_0803 0.44 -1.6 809,854 - Dshi_0803 0.45 -2.7 809,920 - Dshi_0803 0.50 -0.1 809,920 - Dshi_0803 0.50 -0.0 809,944 - Dshi_0803 0.52 -1.6 809,975 - Dshi_0803 0.54 -0.9 810,035 + Dshi_0803 0.59 -2.5 810,068 + Dshi_0803 0.62 +0.5 810,103 + Dshi_0803 0.65 -2.4 810,104 + Dshi_0803 0.65 -0.1 810,117 - Dshi_0803 0.66 +0.7 810,117 - Dshi_0803 0.66 -1.9 810,256 + Dshi_0803 0.77 -1.0 810,267 + Dshi_0803 0.78 -0.8 810,336 - Dshi_0803 0.84 -1.5 810,339 + Dshi_0803 0.84 +0.9 810,339 + Dshi_0803 0.84 -0.9 810,353 - Dshi_0803 0.85 +0.5 810,356 + Dshi_0803 0.85 -1.9 810,364 - Dshi_0803 0.86 -0.4 810,364 - Dshi_0803 0.86 -1.6 810,366 + Dshi_0803 0.86 +0.1 810,520 - -0.6 810,552 - +0.2 810,658 - -1.2 810,706 + +1.3 810,717 - -0.3 810,793 + +1.5 810,816 - Dshi_0804 0.10 +1.5 810,859 - Dshi_0804 0.13 +0.2 810,947 + Dshi_0804 0.18 -1.4 810,980 + Dshi_0804 0.21 -1.2 810,980 + Dshi_0804 0.21 -1.0 811,180 - Dshi_0804 0.33 -1.9 811,181 + Dshi_0804 0.33 +2.5 811,276 - Dshi_0804 0.39 -0.9 811,300 - Dshi_0804 0.40 +0.3 811,332 - Dshi_0804 0.42 +0.9 811,336 + Dshi_0804 0.42 -0.7 811,336 + Dshi_0804 0.42 +1.9 811,337 + Dshi_0804 0.43 -0.1 811,344 - Dshi_0804 0.43 +0.3 811,360 + Dshi_0804 0.44 -0.6 811,366 + Dshi_0804 0.44 -2.2 811,396 - Dshi_0804 0.46 +0.6 811,426 - Dshi_0804 0.48 -0.4 811,481 - Dshi_0804 0.51 -0.5 811,481 - Dshi_0804 0.51 +0.5
Or see this region's nucleotide sequence