Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0742

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0740 and Dshi_0741 are separated by 39 nucleotidesDshi_0741 and Dshi_0742 overlap by 4 nucleotidesDshi_0742 and Dshi_0743 are separated by 162 nucleotides Dshi_0740: Dshi_0740 - Polyphosphate kinase (RefSeq), at 746,526 to 748,700 _0740 Dshi_0741: Dshi_0741 - chromosomal replication initiator, DnaA (RefSeq), at 748,740 to 749,429 _0741 Dshi_0742: Dshi_0742 - protein of unknown function UPF0118 (RefSeq), at 749,426 to 750,511 _0742 Dshi_0743: Dshi_0743 - MscS Mechanosensitive ion channel (RefSeq), at 750,674 to 752,056 _0743 Position (kb) 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 748.576 kb on - strandat 748.604 kb on + strandat 748.650 kb on - strandat 748.674 kb on - strandat 749.487 kb on + strandat 750.514 kb on - strandat 750.514 kb on - strandat 750.578 kb on - strandat 750.656 kb on - strandat 750.670 kb on + strandat 750.739 kb on + strandat 750.747 kb on - strandat 750.760 kb on - strandat 750.788 kb on - strandat 750.800 kb on + strandat 750.891 kb on + strand, within Dshi_0743at 750.923 kb on - strand, within Dshi_0743at 751.014 kb on + strand, within Dshi_0743at 751.034 kb on + strand, within Dshi_0743at 751.044 kb on + strand, within Dshi_0743at 751.129 kb on - strand, within Dshi_0743at 751.194 kb on - strand, within Dshi_0743at 751.260 kb on + strand, within Dshi_0743at 751.261 kb on + strand, within Dshi_0743at 751.268 kb on - strand, within Dshi_0743at 751.425 kb on - strand, within Dshi_0743at 751.479 kb on + strand, within Dshi_0743at 751.479 kb on + strand, within Dshi_0743at 751.487 kb on - strand, within Dshi_0743

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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748,576 - -0.5
748,604 + -1.1
748,650 - -2.5
748,674 - -0.8
749,487 + +1.2
750,514 - +0.5
750,514 - +0.5
750,578 - -2.6
750,656 - -1.9
750,670 + -3.1
750,739 + +1.5
750,747 - -1.3
750,760 - -2.3
750,788 - -1.5
750,800 + +1.0
750,891 + Dshi_0743 0.16 +0.5
750,923 - Dshi_0743 0.18 -1.1
751,014 + Dshi_0743 0.25 -2.5
751,034 + Dshi_0743 0.26 +1.5
751,044 + Dshi_0743 0.27 -1.1
751,129 - Dshi_0743 0.33 -1.0
751,194 - Dshi_0743 0.38 -2.1
751,260 + Dshi_0743 0.42 +0.1
751,261 + Dshi_0743 0.42 -2.7
751,268 - Dshi_0743 0.43 -0.5
751,425 - Dshi_0743 0.54 +2.5
751,479 + Dshi_0743 0.58 +0.7
751,479 + Dshi_0743 0.58 -2.5
751,487 - Dshi_0743 0.59 -0.2

Or see this region's nucleotide sequence