Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0230

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0228 and Dshi_0229 are separated by 4 nucleotidesDshi_0229 and Dshi_0230 are separated by 346 nucleotidesDshi_0230 and Dshi_0231 are separated by 12 nucleotidesDshi_0231 and Dshi_0232 are separated by 257 nucleotides Dshi_0228: Dshi_0228 - pyruvate kinase (RefSeq), at 225,543 to 226,991 _0228 Dshi_0229: Dshi_0229 - hypothetical protein (RefSeq), at 226,996 to 227,220 _0229 Dshi_0230: Dshi_0230 - ribosomal protein L35 (RefSeq), at 227,567 to 227,767 _0230 Dshi_0231: Dshi_0231 - ribosomal protein L20 (RefSeq), at 227,780 to 228,145 _0231 Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473 _0232 Position (kb) 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 226.889 kb on - strandat 227.010 kb on + strandat 227.016 kb on + strandat 227.209 kb on + strandat 227.217 kb on - strandat 227.242 kb on + strandat 227.274 kb on + strandat 227.326 kb on - strandat 227.467 kb on - strandat 228.121 kb on + strandat 228.124 kb on - strandat 228.129 kb on - strandat 228.129 kb on - strandat 228.177 kb on + strandat 228.177 kb on + strandat 228.185 kb on - strandat 228.209 kb on - strandat 228.229 kb on - strandat 228.241 kb on - strandat 228.251 kb on + strandat 228.286 kb on + strandat 228.294 kb on - strandat 228.294 kb on - strandat 228.298 kb on + strandat 228.369 kb on + strandat 228.376 kb on - strandat 228.377 kb on - strandat 228.378 kb on + strandat 228.386 kb on - strandat 228.391 kb on - strandat 228.400 kb on + strandat 228.400 kb on + strandat 228.408 kb on - strandat 228.431 kb on - strandat 228.436 kb on - strandat 228.444 kb on - strandat 228.457 kb on - strandat 228.458 kb on + strandat 228.466 kb on - strandat 228.479 kb on + strandat 228.522 kb on + strand, within Dshi_0232at 228.528 kb on + strand, within Dshi_0232at 228.540 kb on + strand, within Dshi_0232at 228.574 kb on - strand, within Dshi_0232at 228.610 kb on - strand, within Dshi_0232at 228.686 kb on + strand, within Dshi_0232at 228.710 kb on + strand, within Dshi_0232at 228.726 kb on - strand, within Dshi_0232at 228.735 kb on + strand, within Dshi_0232

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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226,889 - -3.6
227,010 + -2.2
227,016 + +0.2
227,209 + +2.5
227,217 - +0.0
227,242 + -2.1
227,274 + +2.3
227,326 - +1.5
227,467 - -1.9
228,121 + -0.5
228,124 - +0.3
228,129 - -1.1
228,129 - -1.5
228,177 + -1.6
228,177 + +0.5
228,185 - -1.2
228,209 - +0.7
228,229 - +0.0
228,241 - +0.2
228,251 + +2.5
228,286 + +0.9
228,294 - -1.0
228,294 - +1.3
228,298 + +3.7
228,369 + +2.1
228,376 - +2.2
228,377 - -0.0
228,378 + +3.9
228,386 - -0.5
228,391 - +1.8
228,400 + -0.3
228,400 + -0.7
228,408 - -0.3
228,431 - +0.5
228,436 - -0.1
228,444 - +1.0
228,457 - -2.6
228,458 + +0.5
228,466 - +0.3
228,479 + -2.3
228,522 + Dshi_0232 0.11 +2.5
228,528 + Dshi_0232 0.12 +0.5
228,540 + Dshi_0232 0.13 -1.0
228,574 - Dshi_0232 0.16 -0.1
228,610 - Dshi_0232 0.19 +0.1
228,686 + Dshi_0232 0.26 -2.5
228,710 + Dshi_0232 0.29 -1.5
228,726 - Dshi_0232 0.30 -1.4
228,735 + Dshi_0232 0.31 +2.1

Or see this region's nucleotide sequence