Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4110 and HP15_4111 are separated by 104 nucleotides HP15_4111 and HP15_4112 are separated by 126 nucleotides
HP15_4110: HP15_4110 - conserved hypothetical protein, at 4,342,414 to 4,344,696
_4110
HP15_4111: HP15_4111 - NADH/ubiquinone/plastoquinone (complex I), at 4,344,801 to 4,346,375
_4111
HP15_4112: HP15_4112 - methyl-accepting chemotaxis protein, at 4,346,502 to 4,348,427
_4112
Position (kb)
4344
4345
4346
4347 Strain fitness (log2 ratio)
-2
-1
0
1 at 4343.938 kb on - strand, within HP15_4110 at 4343.985 kb on + strand, within HP15_4110 at 4344.006 kb on + strand, within HP15_4110 at 4344.080 kb on + strand, within HP15_4110 at 4344.108 kb on - strand, within HP15_4110 at 4344.117 kb on + strand, within HP15_4110 at 4344.136 kb on + strand, within HP15_4110 at 4344.302 kb on + strand, within HP15_4110 at 4344.370 kb on - strand, within HP15_4110 at 4344.375 kb on + strand, within HP15_4110 at 4344.534 kb on - strand at 4344.591 kb on + strand at 4344.613 kb on - strand at 4344.761 kb on - strand at 4345.022 kb on - strand, within HP15_4111 at 4345.027 kb on + strand, within HP15_4111 at 4345.109 kb on - strand, within HP15_4111 at 4345.111 kb on + strand, within HP15_4111 at 4345.112 kb on - strand, within HP15_4111 at 4345.119 kb on - strand, within HP15_4111 at 4345.121 kb on - strand, within HP15_4111 at 4345.126 kb on + strand, within HP15_4111 at 4345.318 kb on - strand, within HP15_4111 at 4345.394 kb on - strand, within HP15_4111 at 4345.394 kb on - strand, within HP15_4111 at 4345.394 kb on - strand, within HP15_4111 at 4345.440 kb on - strand, within HP15_4111 at 4345.450 kb on - strand, within HP15_4111 at 4345.499 kb on + strand, within HP15_4111 at 4345.507 kb on - strand, within HP15_4111 at 4345.507 kb on - strand, within HP15_4111 at 4345.507 kb on - strand, within HP15_4111 at 4345.529 kb on + strand, within HP15_4111 at 4345.539 kb on + strand, within HP15_4111 at 4345.583 kb on + strand, within HP15_4111 at 4345.641 kb on - strand, within HP15_4111 at 4345.752 kb on + strand, within HP15_4111 at 4345.790 kb on + strand, within HP15_4111 at 4345.918 kb on + strand, within HP15_4111 at 4345.967 kb on + strand, within HP15_4111 at 4345.996 kb on + strand, within HP15_4111 at 4346.051 kb on + strand, within HP15_4111 at 4346.123 kb on - strand, within HP15_4111 at 4346.168 kb on - strand, within HP15_4111 at 4346.209 kb on + strand, within HP15_4111 at 4346.285 kb on - strand at 4346.366 kb on + strand at 4346.596 kb on - strand at 4346.721 kb on - strand, within HP15_4112 at 4346.795 kb on - strand, within HP15_4112 at 4346.883 kb on + strand, within HP15_4112 at 4346.958 kb on - strand, within HP15_4112 at 4346.976 kb on - strand, within HP15_4112 at 4347.007 kb on + strand, within HP15_4112 at 4347.048 kb on + strand, within HP15_4112 at 4347.056 kb on - strand, within HP15_4112 at 4347.061 kb on - strand, within HP15_4112 at 4347.099 kb on + strand, within HP15_4112 at 4347.164 kb on - strand, within HP15_4112 at 4347.220 kb on + strand, within HP15_4112 at 4347.278 kb on - strand, within HP15_4112
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 4,343,938 - HP15_4110 0.67 +1.3 4,343,985 + HP15_4110 0.69 -0.1 4,344,006 + HP15_4110 0.70 +0.3 4,344,080 + HP15_4110 0.73 +0.1 4,344,108 - HP15_4110 0.74 +1.6 4,344,117 + HP15_4110 0.75 -0.1 4,344,136 + HP15_4110 0.75 +0.0 4,344,302 + HP15_4110 0.83 +0.3 4,344,370 - HP15_4110 0.86 -0.1 4,344,375 + HP15_4110 0.86 -0.2 4,344,534 - +0.1 4,344,591 + -2.4 4,344,613 - -0.3 4,344,761 - -0.7 4,345,022 - HP15_4111 0.14 -0.5 4,345,027 + HP15_4111 0.14 -0.3 4,345,109 - HP15_4111 0.20 -0.7 4,345,111 + HP15_4111 0.20 +0.9 4,345,112 - HP15_4111 0.20 -0.7 4,345,119 - HP15_4111 0.20 +0.6 4,345,121 - HP15_4111 0.20 +1.1 4,345,126 + HP15_4111 0.21 +1.1 4,345,318 - HP15_4111 0.33 +1.3 4,345,394 - HP15_4111 0.38 -1.5 4,345,394 - HP15_4111 0.38 -1.0 4,345,394 - HP15_4111 0.38 -0.3 4,345,440 - HP15_4111 0.41 -0.1 4,345,450 - HP15_4111 0.41 +0.3 4,345,499 + HP15_4111 0.44 +0.5 4,345,507 - HP15_4111 0.45 -0.4 4,345,507 - HP15_4111 0.45 +0.8 4,345,507 - HP15_4111 0.45 -0.2 4,345,529 + HP15_4111 0.46 -0.2 4,345,539 + HP15_4111 0.47 -0.1 4,345,583 + HP15_4111 0.50 -0.4 4,345,641 - HP15_4111 0.53 -1.2 4,345,752 + HP15_4111 0.60 -0.2 4,345,790 + HP15_4111 0.63 -0.1 4,345,918 + HP15_4111 0.71 -2.1 4,345,967 + HP15_4111 0.74 +0.2 4,345,996 + HP15_4111 0.76 -0.0 4,346,051 + HP15_4111 0.79 -0.9 4,346,123 - HP15_4111 0.84 +1.6 4,346,168 - HP15_4111 0.87 +0.1 4,346,209 + HP15_4111 0.89 -1.2 4,346,285 - +1.0 4,346,366 + +0.3 4,346,596 - +0.2 4,346,721 - HP15_4112 0.11 +0.1 4,346,795 - HP15_4112 0.15 +1.1 4,346,883 + HP15_4112 0.20 +1.6 4,346,958 - HP15_4112 0.24 +0.8 4,346,976 - HP15_4112 0.25 -0.0 4,347,007 + HP15_4112 0.26 -0.2 4,347,048 + HP15_4112 0.28 -0.8 4,347,056 - HP15_4112 0.29 +1.6 4,347,061 - HP15_4112 0.29 +1.1 4,347,099 + HP15_4112 0.31 +1.3 4,347,164 - HP15_4112 0.34 -0.4 4,347,220 + HP15_4112 0.37 -0.9 4,347,278 - HP15_4112 0.40 -0.0
Or see this region's nucleotide sequence